HL_4V9M_186

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

4V9M|1|DA|U|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9M_186 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.3323

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

4V9M|1|DA|U|1727
4V9M|1|DA|G|1728
4V9M|1|DA|A|1729
4V9M|1|DA|U|1730
4V9M|1|DA|G|1731
4V9M|1|DA|A|1732
4V9M|1|DA|G|1733

Current chains

Chain DA

23S ribosomal RNA

Nearby chains