HL_4V9M_191

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4V9M|1|DA|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9M_191 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.184

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V9M|1|DA|G|1910
4V9M|1|DA|U|1911
4V9M|1|DA|A|1912
4V9M|1|DA|A|1913
4V9M|1|DA|C|1914
4V9M|1|DA|U|1915
4V9M|1|DA|A|1916
4V9M|1|DA|U|1917
4V9M|1|DA|A|1918
4V9M|1|DA|A|1919
4V9M|1|DA|C|1920

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CY

Elongation factor G