HL_4V9M_197

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V9M|1|DA|A|2268, 4V9M|1|DA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9M_197 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.2056

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

4V9M|1|DA|C|2264
4V9M|1|DA|U|2265
4V9M|1|DA|A|2266
4V9M|1|DA|A|2267
4V9M|1|DA|A|2268
4V9M|1|DA|A|2269
4V9M|1|DA|G|2270
4V9M|1|DA|G|2271
4V9M|1|DA|U|2272
4V9M|1|DA|A|2273
4V9M|1|DA|A|2274
4V9M|1|DA|C|2275
4V9M|1|DA|G|2276

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain DQ

50S ribosomal protein L16