3D structure

PDB id
4V9O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Control of ribosomal subunit rotation by elongation factor G
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UGCAAUGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V9O_160 not in the Motif Atlas
Homologous match to HL_5J7L_189
Geometric discrepancy: 0.1044
The information below is about HL_5J7L_189
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
24

Unit IDs

4V9O|1|CA|U|2324
4V9O|1|CA|G|2325
4V9O|1|CA|C|2326
4V9O|1|CA|A|2327
4V9O|1|CA|A|2328
4V9O|1|CA|U|2329
4V9O|1|CA|G|2330
4V9O|1|CA|G|2331

Current chains

Chain CA
23S rRNA

Nearby chains

Chain CF
50S ribosomal protein L5
Chain CM
50S ribosomal protein L16
Chain CW
50S ribosomal protein L27

Coloring options:


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