HL_4V9O_196

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUGCAACGCG

Length

12 nucleotides

Bulged bases

4V9O|1|DA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9O_196 not in the Motif Atlas

Geometric match to HL_4TUE_033

Geometric discrepancy: 0.3737

The information below is about HL_4TUE_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V9O|1|DA|C|962
4V9O|1|DA|G|963
4V9O|1|DA|A|964
4V9O|1|DA|U|965
4V9O|1|DA|G|966
4V9O|1|DA|C|967
4V9O|1|DA|A|968
4V9O|1|DA|A|969
4V9O|1|DA|C|970
4V9O|1|DA|G|971
4V9O|1|DA|C|972
4V9O|1|DA|G|973

Current chains

Chain DA

16S rRNA

Nearby chains

Chain DI

30S ribosomal protein S9

Chain DJ

30S ribosomal protein S10

Chain DM

30S ribosomal protein S13

Chain DN

30S ribosomal protein S14

Chain DV

Elongation factor G