HL_4V9O_322

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4V9O|1|GA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9O_322 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.1288

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V9O|1|GA|G|410
4V9O|1|GA|G|411
4V9O|1|GA|A|412
4V9O|1|GA|C|413
4V9O|1|GA|C|414
4V9O|1|GA|A|415
4V9O|1|GA|U|416
4V9O|1|GA|C|417

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GL

50S ribosomal protein L15