HL_4V9O_325

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4V9O|1|GA|U|546, 4V9O|1|GA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9O_325 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.3376

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V9O|1|GA|G|543
4V9O|1|GA|C|544
4V9O|1|GA|U|545
4V9O|1|GA|U|546
4V9O|1|GA|A|547
4V9O|1|GA|G|548
4V9O|1|GA|G|549
4V9O|1|GA|C|550

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GJ

50S ribosomal protein L13

Chain GQ

50S ribosomal protein L20

Chain GR

50S ribosomal protein L21