HL_4V9O_364

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

4V9O|1|GA|G|2308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9O_364 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.2902

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V9O|1|GA|G|2303
4V9O|1|GA|G|2304
4V9O|1|GA|U|2305
4V9O|1|GA|C|2306
4V9O|1|GA|G|2307
4V9O|1|GA|G|2308
4V9O|1|GA|A|2309
4V9O|1|GA|C|2310
4V9O|1|GA|A|2311
4V9O|1|GA|U|2312
4V9O|1|GA|C|2313

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GF

50S ribosomal protein L5