HL_4V9O_386

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

4V9O|1|HA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9O_386 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0677

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V9O|1|HA|G|259
4V9O|1|HA|G|260
4V9O|1|HA|U|261
4V9O|1|HA|A|262
4V9O|1|HA|A|263
4V9O|1|HA|C|264
4V9O|1|HA|G|265
4V9O|1|HA|G|266
4V9O|1|HA|C|267

Current chains

Chain HA

16S rRNA

Nearby chains

Chain HQ

30S ribosomal protein S17

Chain HT

30S ribosomal protein S20