HL_4V9O_388

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9O_388 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0915

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V9O|1|HA|A|320
4V9O|1|HA|A|321
4V9O|1|HA|C|322
4V9O|1|HA|U|323
4V9O|1|HA|G|324
4V9O|1|HA|A|325
4V9O|1|HA|G|326
4V9O|1|HA|A|327
4V9O|1|HA|C|328
4V9O|1|HA|A|329
4V9O|1|HA|C|330
4V9O|1|HA|G|331
4V9O|1|HA|G|332
4V9O|1|HA|U|333

Current chains

Chain HA

16S rRNA

Nearby chains

Chain HP

30S ribosomal protein S16

Chain HT

30S ribosomal protein S20