HL_4V9O_407

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCGCGAGA

Length

8 nucleotides

Bulged bases

4V9O|1|HA|A|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9O_407 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3148

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V9O|1|HA|U|1264
4V9O|1|HA|C|1265
4V9O|1|HA|G|1266
4V9O|1|HA|C|1267
4V9O|1|HA|G|1268
4V9O|1|HA|A|1269
4V9O|1|HA|G|1270
4V9O|1|HA|A|1271

Current chains

Chain HA

16S rRNA

Nearby chains

Chain HM

30S ribosomal protein S13

Chain HN

30S ribosomal protein S14

Chain HS

30S ribosomal protein S19