HL_4V9P_032

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9P_032 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1123

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

4V9P|1|AA|G|1281
4V9P|1|AA|U|1282
4V9P|1|AA|G|1283
4V9P|1|AA|A|1284
4V9P|1|AA|A|1285
4V9P|1|AA|A|1286
4V9P|1|AA|A|1287
4V9P|1|AA|G|1288
4V9P|1|AA|C|1289

Current chains

Chain AA

23S rRNA

Nearby chains

Chain A0

50S ribosomal protein L32

Chain AN

50S ribosomal protein L17

Chain AS

50S ribosomal protein L22