HL_4V9P_138

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

4V9P|1|CA|A|1453, 4V9P|1|CA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9P_138 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.225

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.5

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

4V9P|1|CA|C|1451
4V9P|1|CA|G|1452
4V9P|1|CA|A|1453
4V9P|1|CA|C|1454
4V9P|1|CA|G|1455
4V9P|1|CA|G|1456
4V9P|1|CA|U|1457
4V9P|1|CA|U|1458
4V9P|1|CA|G|1459

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CN

50S ribosomal protein L17