3D structure

PDB id
4V9P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Control of ribosomal subunit rotation by elongation factor G
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CGACGGUUG
Length
9 nucleotides
Bulged bases
4V9P|1|EA|A|1453, 4V9P|1|EA|C|1454
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V9P_241 not in the Motif Atlas
Geometric match to HL_5J7L_169
Geometric discrepancy: 0.2148
The information below is about HL_5J7L_169
Detailed Annotation
Mini UNCG with extended bulge
Broad Annotation
Mini UNCG with extended bulge
Motif group
HL_22622.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4V9P|1|EA|C|1451
4V9P|1|EA|G|1452
4V9P|1|EA|A|1453
4V9P|1|EA|C|1454
4V9P|1|EA|G|1455
4V9P|1|EA|G|1456
4V9P|1|EA|U|1457
4V9P|1|EA|U|1458
4V9P|1|EA|G|1459

Current chains

Chain EA
23S rRNA

Nearby chains

Chain EN
50S ribosomal protein L17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4455 s