HL_4V9P_369

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

4V9P|1|GA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9P_369 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1531

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

4V9P|1|GA|U|2528
4V9P|1|GA|G|2529
4V9P|1|GA|A|2530
4V9P|1|GA|A|2531
4V9P|1|GA|G|2532
4V9P|1|GA|U|2533
4V9P|1|GA|A|2534
4V9P|1|GA|G|2535

Current chains

Chain GA

23S rRNA

Nearby chains

Chain G4

50S ribosomal protein L36

Chain GG

50S ribosomal protein L6

Chain HV

elongation factor G