HL_4V9Q_010

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4V9Q|1|AA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_010 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.113

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V9Q|1|AA|U|305
4V9Q|1|AA|U|306
4V9Q|1|AA|G|307
4V9Q|1|AA|G|308
4V9Q|1|AA|G|309
4V9Q|1|AA|A|310
4V9Q|1|AA|A|311
4V9Q|1|AA|G|312

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L24