HL_4V9Q_045

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4V9Q|1|AA|A|1780, 4V9Q|1|AA|C|1781, 4V9Q|1|AA|C|1782, 4V9Q|1|AA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_045 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0603

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V9Q|1|AA|U|1777
4V9Q|1|AA|U|1778
4V9Q|1|AA|U|1779
4V9Q|1|AA|A|1780
4V9Q|1|AA|C|1781
4V9Q|1|AA|C|1782
4V9Q|1|AA|A|1783
4V9Q|1|AA|A|1784
4V9Q|1|AA|A|1785
4V9Q|1|AA|A|1786
4V9Q|1|AA|A|1787

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L34

Chain AD

50S ribosomal protein L2