HL_4V9Q_067

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_067 not in the Motif Atlas

Geometric match to HL_1G1X_003

Geometric discrepancy: 0.3358

The information below is about HL_1G1X_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V9Q|1|AA|C|2794
4V9Q|1|AA|G|2795
4V9Q|1|AA|U|2797
4V9Q|1|AA|C|2798
4V9Q|1|AA|A|2799
4V9Q|1|AA|A|2801
4V9Q|1|AA|G|2802

Current chains

Chain AA

23S ribosomal RNA

Nearby chains