HL_4V9Q_085

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_085 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1096

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V9Q|1|BA|G|617
4V9Q|1|BA|C|618
4V9Q|1|BA|U|619
4V9Q|1|BA|C|620
4V9Q|1|BA|A|621
4V9Q|1|BA|A|622
4V9Q|1|BA|C|623

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BP

30S ribosomal protein S16