HL_4V9Q_163
3D structure
- PDB id
- 4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUAAAAGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 4V9Q|1|CA|A|2268, 4V9Q|1|CA|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9Q_163 not in the Motif Atlas
- Homologous match to HL_7RQB_054
- Geometric discrepancy: 0.0748
- The information below is about HL_7RQB_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.6
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V9Q|1|CA|C|2264
4V9Q|1|CA|U|2265
4V9Q|1|CA|A|2266
4V9Q|1|CA|A|2267
4V9Q|1|CA|A|2268
4V9Q|1|CA|A|2269
4V9Q|1|CA|G|2270
4V9Q|1|CA|G|2271
4V9Q|1|CA|U|2272
4V9Q|1|CA|A|2273
4V9Q|1|CA|A|2274
4V9Q|1|CA|C|2275
4V9Q|1|CA|G|2276
Current chains
- Chain CA
- 23S ribosomal RNA
Nearby chains
- Chain CM
- 50S ribosomal protein L16
- Chain CW
- 50S ribosomal protein L27
Coloring options: