HL_4V9Q_170

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

4V9Q|1|CA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_170 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.0947

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

4V9Q|1|CA|U|2528
4V9Q|1|CA|G|2529
4V9Q|1|CA|A|2530
4V9Q|1|CA|A|2531
4V9Q|1|CA|G|2532
4V9Q|1|CA|A|2533
4V9Q|1|CA|A|2534
4V9Q|1|CA|G|2535

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CH

50S ribosomal protein L6