HL_4V9Q_211

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V9Q|1|DA|A|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_211 not in the Motif Atlas

Homologous match to HL_4LFB_031

Geometric discrepancy: 0.1681

The information below is about HL_4LFB_031

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V9Q|1|DA|C|1449
4V9Q|1|DA|U|1450
4V9Q|1|DA|A|1451
4V9Q|1|DA|C|1452
4V9Q|1|DA|G|1453
4V9Q|1|DA|G|1454

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DT

30S ribosomal protein S20