HL_4V9Q_231

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGGUGAAAGCCUG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_231 not in the Motif Atlas

Homologous match to HL_5J7L_022

Geometric discrepancy: 0.4234

The information below is about HL_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06285.3

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V9Q|1|DA|C|1008
4V9Q|1|DA|G|1009
4V9Q|1|DA|G|1010
4V9Q|1|DA|G|1011
4V9Q|1|DA|U|1012
4V9Q|1|DA|G|1013
4V9Q|1|DA|A|1014
4V9Q|1|DA|A|1015
4V9Q|1|DA|A|1016
4V9Q|1|DA|G|1017
4V9Q|1|DA|C|1018
4V9Q|1|DA|C|1019
4V9Q|1|DA|U|1020
4V9Q|1|DA|G|1021

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DN

30S ribosomal protein S14

Chain DS

30S ribosomal protein S19