HL_4V9Q_234
3D structure
- PDB id
- 4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGCUCAUAACCC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9Q_234 not in the Motif Atlas
- Homologous match to HL_4V7M_226
- Geometric discrepancy: 0.3014
- The information below is about HL_4V7M_226
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25222.2
- Basepair signature
- cWW-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V9Q|1|DW|G|29
4V9Q|1|DW|G|30
4V9Q|1|DW|G|31
4V9Q|1|DW|C|32
4V9Q|1|DW|U|33
4V9Q|1|DW|C|34
4V9Q|1|DW|A|35
4V9Q|1|DW|U|36
4V9Q|1|DW|A|37
4V9Q|1|DW|A|38
4V9Q|1|DW|C|39
4V9Q|1|DW|C|40
4V9Q|1|DW|C|41
Current chains
- Chain DW
- tRNA
Nearby chains
- Chain DA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DG
- 30S ribosomal protein S7
- Chain DK
- 30S ribosomal protein S11
- Chain DV
- Transfer RNA; tRNA
- Chain DX
- mRNA
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