HL_4V9R_083
3D structure
- PDB id
- 4V9R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 4V9R|1|BA|A|2052, 4V9R|1|BA|A|2053, 4V9R|1|BA|G|2054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9R_083 not in the Motif Atlas
- Homologous match to HL_7RQB_050
- Geometric discrepancy: 0.052
- The information below is about HL_7RQB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.6
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V9R|1|BA|G|2049
4V9R|1|BA|U|2050
4V9R|1|BA|G|2051
4V9R|1|BA|A|2052
4V9R|1|BA|A|2053
4V9R|1|BA|G|2054
4V9R|1|BA|A|2055
4V9R|1|BA|U|2056
4V9R|1|BA|G|2057
4V9R|1|BA|C|2058
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B5
- 50S Ribosomal Protein L32
- Chain BE
- 50S Ribosomal Protein L3
- Chain BU
- 50S Ribosomal Protein L20
- Chain BV
- 50S Ribosomal Protein L21
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