HL_4V9R_087

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V9R|1|BA|A|2280, 4V9R|1|BA|C|2287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9R_087 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0408

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V9R|1|BA|C|2276
4V9R|1|BA|U|2277
4V9R|1|BA|A|2278
4V9R|1|BA|A|2279
4V9R|1|BA|A|2280
4V9R|1|BA|A|2281
4V9R|1|BA|G|2282
4V9R|1|BA|G|2283
4V9R|1|BA|U|2284
4V9R|1|BA|A|2285
4V9R|1|BA|A|2286
4V9R|1|BA|C|2287
4V9R|1|BA|G|2288

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B0

50S Ribosomal Protein L27

Chain BQ

50S Ribosomal Protein L16