HL_4V9S_009

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCCUCGGGA

Length

9 nucleotides

Bulged bases

4V9S|1|AA|C|345

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9S_009 not in the Motif Atlas

Geometric match to HL_2Y9H_004

Geometric discrepancy: 0.1997

The information below is about HL_2Y9H_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97696.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

4V9S|1|AA|U|340
4V9S|1|AA|C|341
4V9S|1|AA|C|342
4V9S|1|AA|U|343
4V9S|1|AA|C|345
4V9S|1|AA|G|346
4V9S|1|AA|G|347
4V9S|1|AA|G|348
4V9S|1|AA|A|349

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AT

30S Ribosomal Protein S20

Chain BO

50S Ribosomal Protein L14

Chain BT

50S Ribosomal Protein L19