HL_4V9S_045

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4V9S|1|BA|A|335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9S_045 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0614

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V9S|1|BA|U|329
4V9S|1|BA|U|330
4V9S|1|BA|G|331
4V9S|1|BA|G|332
4V9S|1|BA|G|333
4V9S|1|BA|A|334
4V9S|1|BA|A|335
4V9S|1|BA|G|336

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BY

50S Ribosomal Protein L24