HL_4V9S_057
3D structure
- PDB id
- 4V9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic GE82832 bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUGAGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9S_057 not in the Motif Atlas
- Homologous match to HL_7RQB_022
- Geometric discrepancy: 0.0757
- The information below is about HL_7RQB_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84085.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
4V9S|1|BA|G|759
4V9S|1|BA|G|760
4V9S|1|BA|U|761
4V9S|1|BA|G|762
4V9S|1|BA|A|763
4V9S|1|BA|G|764
4V9S|1|BA|A|765
4V9S|1|BA|C|766
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AO
- 30S Ribosomal Protein S15
- Chain AQ
- 30S Ribosomal Protein S17
- Chain BD
- 50S Ribosomal Protein L2
Coloring options: