HL_4V9S_060

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4V9S|1|BA|U|874, 4V9S|1|BA|G|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9S_060 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.0585

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

4V9S|1|BA|U|873
4V9S|1|BA|U|874
4V9S|1|BA|U|875
4V9S|1|BA|A|876
4V9S|1|BA|G|877
4V9S|1|BA|G|878

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BP

50S Ribosomal Protein L15