HL_4V9S_079
3D structure
- PDB id
- 4V9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic GE82832 bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 4V9S|1|BA|A|1811, 4V9S|1|BA|C|1812, 4V9S|1|BA|C|1813, 4V9S|1|BA|A|1817
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9S_079 not in the Motif Atlas
- Homologous match to HL_5J7L_178
- Geometric discrepancy: 0.058
- The information below is about HL_5J7L_178
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
4V9S|1|BA|U|1808
4V9S|1|BA|U|1809
4V9S|1|BA|U|1810
4V9S|1|BA|A|1811
4V9S|1|BA|C|1812
4V9S|1|BA|C|1813
4V9S|1|BA|A|1814
4V9S|1|BA|A|1815
4V9S|1|BA|A|1816
4V9S|1|BA|A|1817
4V9S|1|BA|A|1818
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B7
- 50S Ribosomal Protein L34
- Chain BD
- 50S Ribosomal Protein L2
- Chain BW
- 50S Ribosomal Protein L22
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