HL_4V9S_088

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V9S|1|BA|A|2280, 4V9S|1|BA|C|2287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9S_088 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0463

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V9S|1|BA|C|2276
4V9S|1|BA|U|2277
4V9S|1|BA|A|2278
4V9S|1|BA|A|2279
4V9S|1|BA|A|2280
4V9S|1|BA|A|2281
4V9S|1|BA|G|2282
4V9S|1|BA|G|2283
4V9S|1|BA|U|2284
4V9S|1|BA|A|2285
4V9S|1|BA|A|2286
4V9S|1|BA|C|2287
4V9S|1|BA|G|2288

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B0

50S Ribosomal Protein L27

Chain BQ

50S Ribosomal Protein L16