HL_4V9S_181

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9S_181 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.1125

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

4V9S|1|DA|U|1720
4V9S|1|DA|G|1721
4V9S|1|DA|A|1722
4V9S|1|DA|U|1739
4V9S|1|DA|G|1740
4V9S|1|DA|A|1741
4V9S|1|DA|G|1742

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains