HL_4W21_027

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAUGGAAGUCGG

Length

13 nucleotides

Bulged bases

4W21|1|5|A|1983, 4W21|1|5|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38777.1

Basepair signature

cWW-cWW-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

4W21|1|5|C|1977
4W21|1|5|C|1978
4W21|1|5|A|1979
4W21|1|5|U|1980
4W21|1|5|G|1981
4W21|1|5|G|1982
4W21|1|5|A|1983
4W21|1|5|A|1984
4W21|1|5|G|1985
4W21|1|5|U|1986
4W21|1|5|C|1987
4W21|1|5|G|1988
4W21|1|5|G|1989

Current chains

Chain 5

28S ribosomal RNA

Nearby chains