4W21 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4W21_077 | 1/5/30:52 | No text annotation | ||
| HL_4W21_001 | 1/5/37:44 | No text annotation | geometric HL_4WF9_006 HL_48677.1 | |
| HL_4W21_002 | 1/5/68:73 | No text annotation | geometric HL_5TBW_002 NA | |
| HL_4W21_003 | 1/5/89:95 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_4W21_004 | 1/5/131:137 | No text annotation | geometric HL_4LFB_004 HL_89167.1 | |
| HL_4W21_005 | 1/5/204:211 | T-loop with 2 stacked bulged bases | geometric HL_5DH6_002 HL_13999.1 | |
| HL_4W21_006 | 1/5/222:226 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_4W21_007 | 1/5/230:238 | T-loop with unstacked turn | geometric HL_7RQB_012 NA | |
| HL_4W21_078 | 1/5/285:302 | No text annotation | ||
| HL_4W21_008 | 1/5/289:298 | No text annotation | ||
| HL_4W21_009 | 1/5/314:323 | No text annotation | geometric HL_8P9A_121 HL_00911.1 | |
| HL_4W21_010 | 1/5/368:373 | GNRA | geometric HL_4V9F_015 HL_34789.1 | |
| HL_4W21_011 | 1/5/393:398 | GNRA | geometric HL_7RQB_016 NA | |
| HL_4W21_079 | 1/5/996:1047 | No text annotation | ||
| HL_4W21_080 | 1/5/1172:1189 | No text annotation | ||
| HL_4W21_012 | 1/5/1178:1183 | GNRA | geometric HL_5J7L_007 NA | |
| HL_4W21_013 | 1/5/1252:1258 | GNRA | geometric HL_4LFB_012 HL_34789.1 | |
| HL_4W21_014 | 1/5/1317:1326 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_014 NA | |
| HL_4W21_015 | 1/5/1364:1373 | No text annotation | ||
| HL_4W21_016 | 1/5/1406:1411 | No text annotation | ||
| HL_4W21_017 | 1/5/1436:1448 | No text annotation | ||
| HL_4W21_018 | 1/5/1479:1486 | No text annotation | ||
| HL_4W21_019 | 1/5/1561:1566 | GNRA | geometric HL_3LQX_001 HL_34789.1 | |
| HL_4W21_020 | 1/5/1593:1602 | No text annotation | geometric HL_4V9F_024 HL_50204.1 | |
| HL_4W21_021 | 1/5/1627:1635 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_4W21_022 | 1/5/1675:1680 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4W21_023 | 1/5/1763:1769 | GNRA | geometric HL_3RG5_007 HL_34789.1 | |
| HL_4W21_024 | 1/5/1814:1823 | No text annotation | ||
| HL_4W21_081 | 1/5/1864:1870 | GNRA | geometric HL_4V9F_028 HL_34789.1 | |
| HL_4W21_026 | 1/5/1886:1893 | No text annotation | geometric HL_5TBW_026 NA | |
| HL_4W21_082 | 1/5/1978:1988 | No text annotation | ||
| HL_4W21_028 | 1/5/2006:2013 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 | |
| HL_4W21_029 | 1/5/2130:2244 | No text annotation | ||
| HL_4W21_030 | 1/5/2317:2322 | GNRA | geometric HL_2Z75_004 HL_34789.1 | |
| HL_4W21_031 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_032 HL_33597.1 | |
| HL_4W21_032 | 1/5/2420:2426 | Pseudoknot geometry with 3' bulge | geometric HL_5TBW_032 NA | |
| HL_4W21_033 | 1/5/2458:2463 | GNRA variation | geometric HL_1U6B_004 HL_34789.1 | |
| HL_4W21_034 | 1/5/2487:2491 | No text annotation | geometric HL_4O26_001 HL_53014.1 | |
| HL_4W21_035 | 1/5/2522:2533 | No text annotation | ||
| HL_4W21_036 | 1/5/2558:2569 | No text annotation | ||
| HL_4W21_037 | 1/5/2578:2583 | GNRA | geometric HL_5TBW_036 NA | |
| HL_4W21_083 | 1/5/2622:2634 | No text annotation | ||
| HL_4W21_038 | 1/5/2623:2633 | No text annotation | ||
| HL_4W21_039 | 1/5/2664:2670 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.1 | |
| HL_4W21_040 | 1/5/2705:2710 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_4W21_041 | 1/5/2738:2742 | Mini UNCG | geometric HL_4L8H_001 HL_90436.1 | |
| HL_4W21_042 | 1/5/2792:2799 | No text annotation | geometric HL_5TBW_041 NA | |
| HL_4W21_043 | 1/5/2810:2816 | GNRA | geometric HL_5TBW_042 NA | |
| HL_4W21_044 | 1/5/2872:2877 | UNCG | geometric HL_4PMI_004 NA | |
| HL_4W21_084 | 1/5/2910:3584 | No text annotation | ||
| HL_4W21_045 | 1/5/3614:3618 | No text annotation | geometric HL_5TBW_045 NA | |
| HL_4W21_046 | 1/5/3639:3649 | No text annotation | geometric HL_4WF9_043 HL_87681.1 | |
| HL_4W21_047 | 1/5/3667:3675 | tRNA D-loop | geometric HL_6UFM_001 NA | |
| HL_4W21_048 | 1/5/3724:3729 | No text annotation | geometric HL_5U3G_001 NA | |
| HL_4W21_049 | 1/5/3757:3767 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4W21_085 | 1/5/3781:3811 | No text annotation | ||
| HL_4W21_050 | 1/5/3795:3805 | No text annotation | ||
| HL_4W21_051 | 1/5/3873:3882 | No text annotation | geometric HL_5TBW_051 NA | |
| HL_4W21_052 | 1/5/3948:4065 | No text annotation | geometric HL_5AMQ_001 NA | |
| HL_4W21_053 | 1/5/4102:4107 | UNCG | geometric HL_4PDB_001 NA | |
| HL_4W21_054 | 1/5/4139:4145 | No text annotation | ||
| HL_4W21_055 | 1/5/4193:4201 | No text annotation | geometric HL_5TBW_054 NA | |
| HL_4W21_056 | 1/5/4210:4222 | No text annotation | geometric HL_5J7L_187 NA | |
| HL_4W21_057 | 1/5/4250:4258 | No text annotation | geometric HL_5TBW_056 NA | |
| HL_4W21_058 | 1/5/4301:4309 | No text annotation | geometric HL_5TBW_058 NA | |
| HL_4W21_059 | 1/5/4321:4326 | No text annotation | geometric HL_2ZNI_001 HL_75660.6 | |
| HL_4W21_086 | 1/5/4347:4365 | No text annotation | ||
| HL_4W21_060 | 1/5/4352:4362 | No text annotation | geometric HL_4V83_139 NA | |
| HL_4W21_087 | 1/5/4412:4430 | No text annotation | ||
| HL_4W21_061 | 1/5/4417:4425 | No text annotation | geometric HL_5TBW_061 NA | |
| HL_4W21_062 | 1/5/4473:4481 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_4W21_063 | 1/5/4495:4505 | No text annotation | ||
| HL_4W21_064 | 1/5/4540:4545 | GNRA | geometric HL_6CB3_006 HL_34789.1 | |
| HL_4W21_065 | 1/5/4603:4608 | GNRA | geometric HL_4R4V_004 HL_34789.1 | |
| HL_4W21_066 | 1/5/4644:4653 | No text annotation | ||
| HL_4W21_067 | 1/5/4688:4702 | No text annotation | geometric HL_5TBW_067 NA | |
| HL_4W21_068 | 1/5/4907:4914 | No text annotation | ||
| HL_4W21_069 | 1/5/4972:4986 | No text annotation | ||
| HL_4W21_070 | 1/5/5021:5028 | No text annotation | ||
| HL_4W21_071 | 1/7/36:41 | No text annotation | geometric HL_5NFV_001 HL_69752.3 | |
| HL_4W21_072 | 1/7/86:91 | GNRA | geometric HL_5TBW_019 NA | |
| HL_4W21_073 | 1/8/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_17803.1 | |
| HL_4W21_074 | 1/8/68:90 | No text annotation | ||
| HL_4W21_075 | 1/8/107:112 | No text annotation | ||
| HL_4W21_076 | 1/8/121:129 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4W21_025 | tRNA D-loop | ||
| HL_4W21_027 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4W21_001 | 1/5/6:7, 1/8/149:151 | Single bulged C | geometric IL_6ZDP_001 NA | |
| IL_4W21_178 | 1/5/11:14, 1/8/143:145 | Isolated non-canonical cWW pair | geometric IL_4KNQ_003 NA | |
| IL_4W21_002 | 1/5/12:14, 1/8/143:144 | No text annotation | ||
| IL_4W21_003 | 1/5/16:18, 1/8/139:141 | No text annotation | ||
| IL_4W21_179 | 1/5/16:19, 1/8/138:141 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_15225.1 | |
| IL_4W21_004 | 1/5/26:29, 1/5/53:57 | No text annotation | ||
| IL_4W21_005 | 1/5/30:37, 1/5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_4W21_006 | 1/5/81:88, 1/5/96:102 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_006 NA | |
| IL_4W21_007 | 1/5/117:122, 1/5/147:154 | No text annotation | ||
| IL_4W21_180 | 1/5/123:127, 1/5/141:146 | Partly complementary | geometric IL_6CZR_167 NA | |
| IL_4W21_008 | 1/5/124:126, 1/5/142:145 | No text annotation | ||
| IL_4W21_009 | 1/5/160:161, 1/5/274:276 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_4W21_011 | 1/5/168:173, 1/5/263:267 | No text annotation | ||
| IL_4W21_012 | 1/5/180:184, 1/5/253:256 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_4W21_013 | 1/5/184:189, 1/5/252:253 | No text annotation | ||
| IL_4W21_014 | 1/5/199:201, 1/5/214:215 | Single bulged U | geometric IL_4V9F_029 IL_97561.1 | |
| IL_4W21_016 | 1/5/339:342, 1/8/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_4W21_017 | 1/5/348:350, 1/8/25:26 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_4W21_018 | 1/5/387:390, 1/5/401:414 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_4W21_019 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW | geometric IL_4V9F_001 IL_22311.1 | |
| IL_4W21_022 | 1/5/443:446, 1/5/1300:1304 | No text annotation | ||
| IL_4W21_023 | 1/5/459:460, 1/5/695:697 | Single bulged C | geometric IL_1KUQ_002 IL_05642.1 | |
| IL_4W21_024 | 1/5/462:464, 1/5/691:693 | Isolated non-canonical cWW pair | geometric IL_4AOB_005 IL_23751.1 | |
| IL_4W21_181 | 1/5/464:473, 1/5/681:691 | No text annotation | ||
| IL_4W21_025 | 1/5/482:487, 1/5/669:672 | No text annotation | ||
| IL_4W21_182 | 1/5/482:496, 1/5/657:672 | No text annotation | ||
| IL_4W21_026 | 1/5/487:493, 1/5/661:669 | No text annotation | ||
| IL_4W21_027 | 1/5/493:496, 1/5/657:661 | No text annotation | ||
| IL_4W21_028 | 1/5/497:499, 1/5/655:656 | No text annotation | ||
| IL_4W21_029 | 1/5/500:505, 1/5/653:654 | Single stack bend | geometric IL_4V9F_005 IL_15011.1 | |
| IL_4W21_030 | 1/5/508:510, 1/5/649:650 | Single bulged A | geometric IL_1U63_004 IL_14190.1 | |
| IL_4W21_183 | 1/5/512:515, 1/5/646:647 | Multiple bulged bases | geometric IL_3MXH_004 IL_71421.1 | |
| IL_4W21_032 | 1/5/708:709, 1/5/1287:1289 | No text annotation | ||
| IL_4W21_033 | 1/5/722:724, 1/5/942:946 | No text annotation | ||
| IL_4W21_034 | 1/5/726:731, 1/5/938:940 | No text annotation | ||
| IL_4W21_035 | 1/5/731:735, 1/5/928:938 | No text annotation | ||
| IL_4W21_036 | 1/5/735:737, 1/5/927:928 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_4W21_037 | 1/5/740:742, 1/5/922:924 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_4W21_038 | 1/5/745:750, 1/5/912:919 | No text annotation | ||
| IL_4W21_184 | 1/5/745:755, 1/5/908:919 | No text annotation | ||
| IL_4W21_039 | 1/5/750:755, 1/5/908:912 | No text annotation | ||
| IL_4W21_185 | 1/5/989:992, 1/5/1051:1064 | No text annotation | ||
| IL_4W21_041 | 1/5/1074:1079, 1/5/1221:1236 | No text annotation | ||
| IL_4W21_042 | 1/5/1081:1082, 1/5/1217:1219 | No text annotation | ||
| IL_4W21_043 | 1/5/1082:1085, 1/5/1212:1217 | No text annotation | ||
| IL_4W21_044 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C | geometric IL_7KGA_001 NA | |
| IL_4W21_186 | 1/5/1094:1097, 1/5/1198:1202 | No text annotation | geometric IL_1HYS_004 NA | |
| IL_4W21_045 | 1/5/1097:1098, 1/5/1197:1199 | No text annotation | ||
| IL_4W21_047 | 1/5/1172:1177, 1/5/1184:1189 | No text annotation | ||
| IL_4W21_049 | 1/5/1357:1361, 1/5/1376:1382 | No text annotation | ||
| IL_4W21_050 | 1/5/1425:1429, 1/5/1455:1460 | No text annotation | ||
| IL_4W21_051 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared | geometric IL_4WF9_087 IL_58355.1 | |
| IL_4W21_052 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A | geometric IL_5TBW_024 NA | |
| IL_4W21_054 | 1/5/1474:1478, 1/5/1487:1490 | No text annotation | ||
| IL_4W21_055 | 1/5/1520:1526, 1/5/1648:1657 | No text annotation | ||
| IL_4W21_057 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G | geometric IL_4V9F_026 IL_28408.1 | |
| IL_4W21_058 | 1/5/1551:1555, 1/5/1572:1576 | Triple sheared | geometric IL_5TBW_030 NA | |
| IL_4W21_059 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW | geometric IL_5TBW_031 NA | |
| IL_4W21_060 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U | geometric IL_5TBW_032 NA | |
| IL_4W21_061 | 1/5/1624:1626, 1/5/1636:1640 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_4W21_062 | 1/5/1672:1674, 1/5/1681:1682 | Single stack bend | geometric IL_4V83_236 IL_15011.1 | |
| IL_4W21_063 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation | ||
| IL_4W21_065 | 1/5/1732:1737, 1/5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_4W21_066 | 1/5/1737:1738, 1/5/1790:1792 | Minor groove platform | geometric IL_6DLR_003 IL_34520.1 | |
| IL_4W21_067 | 1/5/1739:1744, 1/5/1786:1789 | C-loop | geometric IL_5TBW_040 NA | |
| IL_4W21_068 | 1/5/1746:1749, 1/5/1781:1784 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_4W21_187 | 1/5/1746:1759, 1/5/1773:1784 | No text annotation | ||
| IL_4W21_069 | 1/5/1749:1751, 1/5/1779:1781 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_4W21_070 | 1/5/1751:1759, 1/5/1773:1779 | No text annotation | ||
| IL_4W21_072 | 1/5/1761:1763, 1/5/1769:1771 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_01003.1 | |
| IL_4W21_188 | 1/5/1855:1860, 1/5/1874:1879 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_4W21_074 | 1/5/1858:1860, 1/5/1874:1876 | Isolated non-canonical cWW pair | geometric IL_1U9S_007 NA | |
| IL_4W21_076 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN | geometric IL_5TBW_048 NA | |
| IL_4W21_077 | 1/5/1911:1918, 1/5/2064:2065 | SSU/LSU pseudoknot | geometric IL_4V9F_038 IL_11411.1 | |
| IL_4W21_078 | 1/5/1918:1920, 1/5/2063:2064 | No text annotation | ||
| IL_4W21_079 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation | geometric IL_8CRE_390 IL_05642.1 | |
| IL_4W21_080 | 1/5/1924:1933, 1/5/2053:2060 | No text annotation | ||
| IL_4W21_081 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_4W21_082 | 1/5/1946:1950, 1/5/2033:2036 | Tandem non-canonical cWW pairs | geometric IL_6L0Y_002 IL_10994.1 | |
| IL_4W21_083 | 1/5/1957:1965, 1/5/2022:2026 | Kink-turn | geometric IL_4V9F_042 IL_99692.3 | |
| IL_4W21_084 | 1/5/1973:1977, 1/5/1989:1993 | No text annotation | ||
| IL_4W21_085 | 1/5/2001:2005, 1/5/2014:2016 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_36931.1 | |
| IL_4W21_189 | 1/5/2082:2085, 1/5/2272:2274 | Isolated non-canonical cWW pair | geometric IL_7A0S_042 IL_01003.1 | |
| IL_4W21_086 | 1/5/2083:2085, 1/5/2272:2273 | No text annotation | ||
| IL_4W21_190 | 1/5/2087:2128, 1/5/2246:2270 | No text annotation | ||
| IL_4W21_087 | 1/5/2290:2292, 1/5/2342:2345 | No text annotation | ||
| IL_4W21_191 | 1/5/2290:2294, 1/5/2340:2345 | Partly complementary | geometric IL_7VYX_008 IL_71154.1 | |
| IL_4W21_089 | 1/5/2299:2301, 1/5/2334:2335 | Single bulged A | geometric IL_3OXE_001 IL_14190.1 | |
| IL_4W21_090 | 1/5/2302:2309, 1/5/2329:2333 | Kink-turn | geometric IL_5J7L_288 NA | |
| IL_4W21_091 | 1/5/2310:2314, 1/5/2325:2328 | No text annotation | ||
| IL_4W21_192 | 1/5/2311:2315, 1/5/2324:2327 | Tandem non-canonical cWW pairs | geometric IL_8UIW_002 IL_71194.1 | |
| IL_4W21_092 | 1/5/2358:2364, 1/5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_8P9A_289 IL_02666.1 | |
| IL_4W21_093 | 1/5/2415:2419, 1/5/2427:2429 | C-loop | geometric IL_7A0S_047 IL_06671.1 | |
| IL_4W21_094 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN | geometric IL_5TBW_063 NA | |
| IL_4W21_095 | 1/5/2477:2479, 1/5/2499:2500 | Single stack bend | geometric IL_4WF9_007 IL_15011.1 | |
| IL_4W21_096 | 1/5/2542:2547, 1/5/2772:2774 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_4W21_097 | 1/5/2589:2593, 1/5/2752:2756 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_4W21_193 | 1/5/2598:2605, 1/5/2734:2747 | No text annotation | ||
| IL_4W21_099 | 1/5/2613:2614, 1/5/2724:2726 | No text annotation | ||
| IL_4W21_100 | 1/5/2614:2615, 1/5/2722:2724 | Single stack bend | geometric IL_4WF9_007 IL_15011.1 | |
| IL_4W21_101 | 1/5/2642:2648, 1/5/2685:2692 | No text annotation | ||
| IL_4W21_102 | 1/5/2651:2653, 1/5/2681:2682 | No text annotation | geometric IL_8ZA0_002 IL_28408.1 | |
| IL_4W21_194 | 1/5/2655:2662, 1/5/2672:2679 | No text annotation | ||
| IL_4W21_103 | 1/5/2656:2662, 1/5/2672:2678 | No text annotation | ||
| IL_4W21_195 | 1/5/2702:2705, 1/5/2710:2714 | Tandem non-canonical cWW pairs | geometric IL_4EYA_010 IL_15225.1 | |
| IL_4W21_104 | 1/5/2703:2705, 1/5/2710:2713 | No text annotation | ||
| IL_4W21_105 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation | geometric IL_5TBW_074 NA | |
| IL_4W21_196 | 1/5/2841:2846, 1/5/3842:3847 | No text annotation | ||
| IL_4W21_107 | 1/5/2844:2846, 1/5/3842:3844 | Isolated tWW turn | geometric IL_5J7L_305 NA | |
| IL_4W21_108 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_4W21_197 | 1/5/2847:2855, 1/5/3837:3841 | No text annotation | geometric IL_5J7L_386 NA | |
| IL_4W21_109 | 1/5/2850:2855, 1/5/3837:3840 | Intercalated tWH | geometric IL_4V9F_062 IL_28217.1 | |
| IL_4W21_110 | 1/5/2867:2872, 1/5/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.1 | |
| IL_4W21_111 | 1/5/2889:2891, 1/5/3610:3612 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 NA | |
| IL_4W21_198 | 1/5/2893:2897, 1/5/3602:3608 | No text annotation | ||
| IL_4W21_112 | 1/5/2894:2897, 1/5/3602:3607 | No text annotation | ||
| IL_4W21_113 | 1/5/2901:2905, 1/5/3589:3598 | No text annotation | ||
| IL_4W21_115 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A | geometric IL_4V9F_064 IL_14190.1 | |
| IL_4W21_117 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related | geometric IL_5TBW_083 NA | |
| IL_4W21_118 | 1/5/3700:3703, 1/5/3749:3750 | Major groove intercalation | geometric IL_5TBW_084 NA | |
| IL_4W21_119 | 1/5/3704:3705, 1/5/3745:3748 | Major groove intercalation | geometric IL_5TBW_085 NA | |
| IL_4W21_199 | 1/5/3708:3724, 1/5/3729:3742 | No text annotation | ||
| IL_4W21_120 | 1/5/3780:3781, 1/5/3811:3814 | Bulged stacked bases | geometric IL_4V9F_070 IL_24886.1 | |
| IL_4W21_121 | 1/5/3781:3795, 1/5/3805:3811 | No text annotation | ||
| IL_4W21_122 | 1/5/3895:3902, 1/5/4558:4565 | No text annotation | ||
| IL_4W21_123 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U | geometric IL_5TBW_093 NA | |
| IL_4W21_124 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_4W21_125 | 1/5/3927:3929, 1/5/4181:4184 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 NA | |
| IL_4W21_200 | 1/5/4078:4088, 1/5/4161:4168 | No text annotation | ||
| IL_4W21_127 | 1/5/4079:4088, 1/5/4161:4167 | No text annotation | ||
| IL_4W21_128 | 1/5/4095:4098, 1/5/4111:4113 | No text annotation | geometric IL_4N0T_004 IL_32983.1 | |
| IL_4W21_129 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A | geometric IL_5TBW_098 NA | |
| IL_4W21_201 | 1/5/4238:4243, 1/5/4267:4286 | No text annotation | ||
| IL_4W21_131 | 1/5/4239:4243, 1/5/4267:4285 | No text annotation | ||
| IL_4W21_132 | 1/5/4243:4245, 1/5/4263:4267 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_4W21_133 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_4W21_134 | 1/5/4295:4298, 1/5/4312:4315 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 NA | |
| IL_4W21_135 | 1/5/4347:4351, 1/5/4363:4365 | No text annotation | geometric IL_8CRE_417 IL_32983.1 | |
| IL_4W21_136 | 1/5/4400:4401, 1/5/4442:4444 | No text annotation | ||
| IL_4W21_137 | 1/5/4401:4403, 1/5/4440:4442 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_4W21_138 | 1/5/4403:4405, 1/5/4439:4440 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_4W21_139 | 1/5/4405:4407, 1/5/4435:4439 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_4W21_140 | 1/5/4412:4416, 1/5/4426:4430 | Triple sheared | geometric IL_5TBW_106 NA | |
| IL_4W21_141 | 1/5/4453:4454, 1/5/4526:4528 | Major groove platform | geometric IL_4V9F_086 IL_46637.1 | |
| IL_4W21_202 | 1/5/4453:4458, 1/5/4520:4528 | No text annotation | ||
| IL_4W21_142 | 1/5/4456:4458, 1/5/4520:4524 | No text annotation | ||
| IL_4W21_143 | 1/5/4458:4459, 1/5/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_4W21_144 | 1/5/4472:4473, 1/5/4481:4483 | No text annotation | ||
| IL_4W21_203 | 1/5/4534:4540, 1/5/4545:4552 | No text annotation | ||
| IL_4W21_145 | 1/5/4535:4538, 1/5/4547:4551 | No text annotation | ||
| IL_4W21_146 | 1/5/4577:4579, 1/5/4723:4726 | No text annotation | geometric IL_8CRE_417 IL_32983.1 | |
| IL_4W21_147 | 1/5/4579:4582, 1/5/4721:4723 | No text annotation | ||
| IL_4W21_148 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared | geometric IL_5TBW_114 NA | |
| IL_4W21_149 | 1/5/4590:4592, 1/5/4618:4620 | Isolated non-canonical cWW pair | geometric IL_5ZTM_002 NA | |
| IL_4W21_150 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_4W21_151 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation | ||
| IL_4W21_152 | 1/5/4632:4637, 1/5/4662:4666 | No text annotation | geometric IL_8P9A_346 IL_98200.1 | |
| IL_4W21_153 | 1/5/4638:4640, 1/5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10892.1 | |
| IL_4W21_204 | 1/5/4638:4642, 1/5/4655:4661 | No text annotation | ||
| IL_4W21_154 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases | geometric IL_1KXK_003 NA | |
| IL_4W21_155 | 1/5/4681:4685, 1/5/4705:4709 | UAA/GAN | geometric IL_7RQB_055 NA | |
| IL_4W21_205 | 1/5/4740:4746, 1/5/4954:4959 | No text annotation | ||
| IL_4W21_206 | 1/5/4755:4765, 1/5/4869:4878 | No text annotation | ||
| IL_4W21_159 | 1/5/4768:4772, 1/5/4863:4866 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_71194.1 | |
| IL_4W21_160 | 1/5/4891:4896, 1/5/4924:4928 | No text annotation | ||
| IL_4W21_161 | 1/5/4899:4901, 1/5/4920:4921 | No text annotation | ||
| IL_4W21_162 | 1/5/4992:4994, 1/5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_01003.1 | |
| IL_4W21_163 | 1/5/4996:5000, 1/5/5050:5055 | No text annotation | ||
| IL_4W21_207 | 1/5/4996:5010, 1/5/5038:5055 | No text annotation | ||
| IL_4W21_164 | 1/5/5000:5002, 1/5/5045:5050 | No text annotation | ||
| IL_4W21_165 | 1/5/5002:5010, 1/5/5038:5045 | No text annotation | ||
| IL_4W21_166 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged C | geometric IL_4WF9_035 IL_05642.1 | |
| IL_4W21_167 | 1/5/5014:5017, 1/5/5032:5035 | Double sheared | geometric IL_4V9F_100 IL_58355.1 | |
| IL_4W21_168 | 1/7/15:16, 1/7/62:64 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_4W21_208 | 1/7/15:18, 1/7/60:64 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_15225.1 | |
| IL_4W21_170 | 1/7/21:27, 1/7/52:57 | Minor groove platform related | geometric IL_5TBW_373 NA | |
| IL_4W21_171 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop | geometric IL_5J7L_357 NA | |
| IL_4W21_172 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4W21_174 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_62167.1 | |
| IL_4W21_175 | 1/7/79:81, 1/7/95:97 | Isolated non-canonical cWW pair | geometric IL_4Y1M_005 IL_71625.1 | |
| IL_4W21_176 | 1/7/82:85, 1/7/92:94 | Isolated non-canonical cWW pair | geometric IL_5TBW_378 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4W21_031 | Isolated non-canonical cWW with bulges | ||
| IL_4W21_040 | No text annotation | ||
| IL_4W21_075 | Isolated cWS basepair | ||
| IL_4W21_157 | No text annotation | ||
| IL_4W21_158 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4W21_001 | 1/5/112:116, 1/5/155:160, 1/5/276:278 | No text annotation | ||
| J3_4W21_010 | 1/5/194:199, 1/5/215:228, 1/5/240:247 | No text annotation | ||
| J3_4W21_011 | 1/5/351:367, 1/5/374:379, 1/8/21:24 | No text annotation | geometric J3_8CRE_004 NA | |
| J3_4W21_012 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation | geometric J3_8CRE_005 NA | |
| J3_4W21_013 | 1/5/443:458, 1/5/698:704, 1/5/1293:1304 | No text annotation | ||
| J3_4W21_014 | 1/5/708:713, 1/5/955:978, 1/5/1276:1289 | No text annotation | ||
| J3_4W21_002 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation | geometric J3_5J7L_038 NA | |
| J3_4W21_015 | 1/5/1531:1537, 1/5/1622:1626, 1/5/1636:1643 | No text annotation | ||
| J3_4W21_003 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation | geometric J3_8P9A_050 J3_21998.1 | |
| J3_4W21_004 | 1/5/1969:1971, 1/5/1995:2001, 1/5/2016:2018 | No text annotation | geometric J3_5J7L_040 NA | |
| J3_4W21_005 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation | geometric J3_8CRE_013 NA | |
| J3_4W21_006 | 1/5/2402:2405, 1/5/2785:2792, 1/5/2799:2802 | No text annotation | ||
| J3_4W21_016 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation | geometric J3_8P9A_055 J3_94309.1 | |
| J3_4W21_017 | 1/5/2450:2456, 1/5/2465:2476, 1/5/2501:2509 | No text annotation | ||
| J3_4W21_018 | 1/5/2549:2556, 1/5/2571:2575, 1/5/2757:2770 | No text annotation | ||
| J3_4W21_019 | 1/5/2575:2578, 1/5/2583:2589, 1/5/2756:2757 | No text annotation | ||
| J3_4W21_007 | 1/5/3934:3939, 1/5/4074:4078, 1/5/4168:4176 | No text annotation | ||
| J3_4W21_008 | 1/5/4091:4095, 1/5/4113:4129, 1/5/4155:4158 | No text annotation | ||
| J3_4W21_020 | 1/5/4091:4099, 1/5/4110:4129, 1/5/4155:4158 | No text annotation | ||
| J3_4W21_021 | 1/5/4463:4470, 1/5/4485:4493, 1/5/4507:4513 | No text annotation | ||
| J3_4W21_022 | 1/5/4748:4754, 1/5/4879:4888, 1/5/4931:4952 | No text annotation | ||
| J3_4W21_009 | 1/5/4970:4972, 1/5/4986:4991, 1/5/5060:5063 | No text annotation | ||
| J3_4W21_023 | 1/7/6:14, 1/7/65:66, 1/7/109:113 | No text annotation | ||
| J4_4W21_001 | 1/5/194:199, 1/5/215:222, 1/5/226:228, 1/5/240:247 | No text annotation | ||
| J4_4W21_002 | 1/5/980:983, 1/5/1070:1074, 1/5/1236:1246, 1/5/1264:1274 | No text annotation | ||
| J4_4W21_003 | 1/5/2406:2410, 1/5/2434:2439, 1/5/2538:2539, 1/5/2777:2784 | No text annotation | ||
| J4_4W21_004 | 1/5/2618:2619, 1/5/2637:2642, 1/5/2692:2698, 1/5/2718:2719 | No text annotation | ||
| J4_4W21_005 | 1/5/4587:4590, 1/5/4620:4621, 1/5/4676:4678, 1/5/4712:4715 | No text annotation | ||
| J5_4W21_001 | 1/5/111:116, 1/5/155:160, 1/5/276:283, 1/5/304:310, 1/5/327:330 | No text annotation | ||
| J5_4W21_002 | 1/5/1335:1341, 1/5/1515:1519, 1/5/1658:1661, 1/5/2288:2290, 1/5/2345:2351 | No text annotation | ||
| J5_4W21_003 | 1/5/1352:1355, 1/5/1384:1399, 1/5/1418:1421, 1/5/1464:1466, 1/5/1499:1504 | No text annotation | ||
| J5_4W21_004 | 1/5/2358:2371, 1/5/2389:2399, 1/5/2805:2807, 1/5/2819:2829, 1/5/3856:3863 | No text annotation | ||
| J5_4W21_005 | 1/5/2847:2863, 1/5/2887:2888, 1/5/3613:3614, 1/5/3618:3626, 1/5/3835:3841 | No text annotation | ||
| J5_4W21_006 | 1/5/2855:2863, 1/5/2887:2888, 1/5/3613:3614, 1/5/3618:3626, 1/5/3835:3837 | No text annotation | ||
| J5_4W21_007 | 1/5/3903:3911, 1/5/4391:4405, 1/5/4439:4453, 1/5/4528:4534, 1/5/4552:4557 | No text annotation | ||
| J5_4W21_008 | 1/5/3920:3923, 1/5/4188:4192, 1/5/4202:4205, 1/5/4227:4228, 1/5/4375:4381 | No text annotation | ||
| J5_4W21_009 | 1/5/4228:4237, 1/5/4287:4291, 1/5/4318:4319, 1/5/4328:4345, 1/5/4367:4375 | No text annotation | ||
| J6_4W21_001 | 1/5/3634:3638, 1/5/3650:3657, 1/5/3687:3698, 1/5/3752:3755, 1/5/3769:3780, 1/5/3814:3826 | No text annotation | ||
| J7_4W21_001 | 1/5/1666:1674, 1/5/1681:1685, 1/5/1852:1855, 1/5/1879:1885, 1/5/1894:1901, 1/5/2075:2081, 1/5/2275:2283 | No text annotation | ||
| J8_4W21_001 | 1/5/3920:3923, 1/5/4188:4192, 1/5/4202:4205, 1/5/4227:4237, 1/5/4287:4291, 1/5/4318:4319, 1/5/4328:4345, 1/5/4367:4381 | No text annotation | ||
| J10_4W21_001 | 1/5/19:26, 1/5/57:67, 1/5/74:78, 1/5/105:109, 1/5/332:339, 1/8/33:45, 1/8/58:66, 1/8/92:106, 1/8/113:114, 1/8/136:138 | No text annotation | ||
| J10_4W21_002 | 1/5/19:29, 1/5/53:67, 1/5/74:78, 1/5/105:109, 1/5/332:339, 1/8/33:45, 1/8/58:66, 1/8/92:106, 1/8/113:114, 1/8/136:138 | No text annotation |
Problematic loops
No problematic loops
Coloring options: