HL_4W21_035

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUCAGAUCCC

Length

12 nucleotides

Bulged bases

4W21|1|5|U|2530, 4W21|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22952.1

Basepair signature

cWW-R-R-R-R-R-R

Number of instances in this motif group

2

Unit IDs

4W21|1|5|G|2522
4W21|1|5|G|2523
4W21|1|5|U|2524
4W21|1|5|U|2525
4W21|1|5|C|2526
4W21|1|5|A|2527
4W21|1|5|G|2528
4W21|1|5|A|2529
4W21|1|5|U|2530
4W21|1|5|C|2531
4W21|1|5|C|2532
4W21|1|5|C|2533

Current chains

Chain 5

28S ribosomal RNA

Nearby chains