HL_4W21_056

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

4W21|1|5|A|4214, 4W21|1|5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41833.7

Basepair signature

cWW-tSH-tHH-tWW-R-R-R

Number of instances in this motif group

10

Unit IDs

4W21|1|5|U|4210
4W21|1|5|C|4211
4W21|1|5|A|4212
4W21|1|5|A|4213
4W21|1|5|A|4214
4W21|1|5|C|4215
4W21|1|5|G|4216
4W21|1|5|G|4217
4W21|1|5|U|4218
4W21|1|5|A|4219
4W21|1|5|A|4220
4W21|1|5|C|4221
4W21|1|5|G|4222

Current chains

Chain 5

28S ribosomal RNA

Nearby chains