HL_4W21_069

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUCGUAGACGACCUG

Length

15 nucleotides

Bulged bases

4W21|1|5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84575.1

Basepair signature

cWW-cWW-cWW-R-R-R-R-R-R

Number of instances in this motif group

2

Unit IDs

4W21|1|5|U|4972
4W21|1|5|U|4973
4W21|1|5|C|4974
4W21|1|5|G|4975
4W21|1|5|U|4976
4W21|1|5|A|4977
4W21|1|5|G|4978
4W21|1|5|A|4979
4W21|1|5|C|4980
4W21|1|5|G|4981
4W21|1|5|A|4982
4W21|1|5|C|4983
4W21|1|5|C|4984
4W21|1|5|U|4985
4W21|1|5|G|4986

Current chains

Chain 5

28S ribosomal RNA

Nearby chains