HL_4W21_080

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGACUGUCCCCAGUGCG

Length

18 nucleotides

Bulged bases

4W21|1|5|C|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|C|1172
4W21|1|5|G|1173
4W21|1|5|G|1174
4W21|1|5|A|1175
4W21|1|5|C|1176
4W21|1|5|U|1177
4W21|1|5|G|1178
4W21|1|5|U|1179
4W21|1|5|C|1180
4W21|1|5|C|1181
4W21|1|5|C|1182
4W21|1|5|C|1183
4W21|1|5|A|1184
4W21|1|5|G|1185
4W21|1|5|U|1186
4W21|1|5|G|1187
4W21|1|5|C|1188
4W21|1|5|G|1189

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA