HL_4W21_081

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

4W21|1|5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W21_081 not in the Motif Atlas

Geometric match to HL_4V9F_028

Geometric discrepancy: 0.189

The information below is about HL_4V9F_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4W21|1|5|G|1864
4W21|1|5|G|1865
4W21|1|5|U|1866
4W21|1|5|A|1867
4W21|1|5|A|1868
4W21|1|5|G|1869
4W21|1|5|C|1870

Current chains

Chain 5

28S ribosomal RNA

Nearby chains