HL_4W23_007

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGUCGCCGUGCCU

Length

13 nucleotides

Bulged bases

4W23|1|2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80263.1

Basepair signature

cWW-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

5

Unit IDs

4W23|1|2|A|376
4W23|1|2|G|377
4W23|1|2|U|378
4W23|1|2|C|379
4W23|1|2|G|380
4W23|1|2|C|381
4W23|1|2|C|382
4W23|1|2|G|383
4W23|1|2|U|384
4W23|1|2|G|385
4W23|1|2|C|386
4W23|1|2|C|387
4W23|1|2|U|388

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein eS8

Chain L

Ribosomal protein uS17