Motif HL_80263.1 Version HL_80263.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-11 | 4-9 | 5-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4W23_019 | 4W23 | 0.7229 | 0 | 2 | 18S ribosomal RNA | G | 956 | A | 957 | G | 958 | G | 959 | U | 960 | G | 961 | A | 962 | A | 963 | A | 964 | U | 965 | U | 966 | C | 967 | cWW | ncHW | ntSH | |||
| 2 | HL_4CUX_021 | 4CUX | 0.6788 | 0 | 2 | 18S RRNA | G | 899 | A | 900 | G | 901 | G | 902 | U | 903 | G | 904 | A | 905 | A | 906 | A | 907 | U | 908 | U | 909 | C | 910 | cWW | ncWW | tSH | |||
| 3 | HL_1FJG_023 | 1FJG | 0.3929 | 0 | A | SSU rRNA | C | 1027 | C | 1028 | C | 1029 | C | 1030 | G | 1030|||A | C | 1030|||B | G | 1030|||C | A | 1030|||D | G | 1031 | G | 1032 | G | 1033 | G | 1034 | cWW | ncWW | ||||
| 4 | HL_4W21_036 | 4W21 | 0.0000 | 0 | 5 | 28S ribosomal RNA | C | 2558 | G | 2559 | C | 2560 | C | 2561 | G | 2562 | C | 2563 | G | 2564 | A | 2565 | G | 2566 | G | 2567 | C | 2568 | G | 2569 | cWW | ncWw | ||||
| 5 | HL_4W23_007 | 4W23 | 0.5036 | 1 | 2 | 18S ribosomal RNA | A | 376 | G | 377 | U | 378 | C | 379 | G | 380 | C | 381 | C | 382 | G | 383 | U | 384 | C | 386 | C | 387 | U | 388 |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGGUGAAAUUC | 2 |
| CCCCGCGAGGGG | 1 |
| CGCCGCGAGGCG | 1 |
| AGUCGCCGUGCCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGUGAAAUU | 2 |
| CCCGCGAGGG | 1 |
| GCCGCGAGGC | 1 |
| GUCGCCGUGCC | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_80263.1 | Only in the parent motif |
|---|---|---|---|
| HL_72372.1 Compare | HL_1FJG_023, HL_4CUX_021 | HL_4W23_019, HL_4W23_007, HL_4W21_036 | HL_1VWW_036, HL_1VX2_031, HL_1VWW_038 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.28 | Avg 0.49 | Max 0.78
Coloring options: