HL_4W23_019

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGGUGAAAUUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80263.1

Basepair signature

cWW-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

5

Unit IDs

4W23|1|2|G|956
4W23|1|2|A|957
4W23|1|2|G|958
4W23|1|2|G|959
4W23|1|2|U|960
4W23|1|2|G|961
4W23|1|2|A|962
4W23|1|2|A|963
4W23|1|2|A|964
4W23|1|2|U|965
4W23|1|2|U|966
4W23|1|2|C|967

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

Ribosomal protein uS11