HL_4W23_032

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

4W23|1|2|A|1663, 4W23|1|2|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24544.6

Basepair signature

cWW-tWH-R-tSH-R

Number of instances in this motif group

11

Unit IDs

4W23|1|2|G|1658
4W23|1|2|U|1659
4W23|1|2|C|1660
4W23|1|2|A|1661
4W23|1|2|U|1662
4W23|1|2|A|1663
4W23|1|2|A|1664
4W23|1|2|G|1665
4W23|1|2|C|1666

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Ribosomal protein uS3

Chain Q

Ribosomal protein uS9

Chain T

Ribosomal protein eS19

Chain U

Ribosomal protein uS10

Chain d

Ribosomal protein uS14