HL_4W29_008

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.2028

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4W29|1|AA|C|320
4W29|1|AA|A|321
4W29|1|AA|C|322
4W29|1|AA|U|323
4W29|1|AA|G|324
4W29|1|AA|A|325
4W29|1|AA|G|326
4W29|1|AA|A|327
4W29|1|AA|C|328
4W29|1|AA|A|329
4W29|1|AA|C|330
4W29|1|AA|G|331
4W29|1|AA|G|332
4W29|1|AA|G|333

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20