RNA 3D Hub //

4W29 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4W29_0011/AA/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.3
HL_4W29_0021/AA/68J:68PNo text annotation
geometric
HL_5U3G_001
HL_75660.2
HL_4W29_0031/AA/158:163GNRA
homologous
HL_4LFB_003
HL_37824.3
HL_4W29_0041/AA/186F:186KNo text annotation
homologous
HL_4LFB_004
HL_48417.2
HL_4W29_0051/AA/201:216No text annotation
geometric
HL_5AH5_007
HL_46878.1
HL_4W29_0061/AA/259:267GNRA related
homologous
HL_4LFB_006
HL_84299.1
HL_4W29_0071/AA/296:301GNRA
homologous
HL_4LFB_007
HL_37824.3
HL_4W29_0081/AA/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.2
HL_4W29_0091/AA/342:347UNCG
homologous
HL_6CZR_080
HL_34617.2
HL_4W29_0101/AA/379:384GNRA
homologous
HL_5J7L_010
HL_37824.3
HL_4W29_0111/AA/419:424UNCG
homologous
HL_5J7L_011
HL_34617.2
HL_4W29_0121/AA/458:474GNRA
homologous
HL_6CZR_083
HL_37824.3
HL_4W29_0131/AA/522:527No text annotation
geometric
HL_4V88_198
NA
HL_4W29_0141/AA/617:623No text annotation
homologous
HL_6CZR_085
HL_20554.2
HL_4W29_0151/AA/689:698No text annotation
homologous
HL_5J7L_015
HL_75293.3
HL_4W29_0161/AA/726:731GNRA
homologous
HL_4LFB_016
HL_37824.3
HL_4W29_0171/AA/786:796No text annotation
homologous
HL_6CZR_088
HL_75293.3
HL_4W29_0181/AA/838:848No text annotation
homologous
HL_6CZR_089
HL_46878.1
HL_4W29_0191/AA/862:867GNRA
homologous
HL_5J7L_019
HL_37824.3
HL_4W29_0201/AA/897:902GNRA
homologous
HL_4LFB_020
HL_37824.3
HL_4W29_0211/AA/963:972No text annotation
homologous
HL_5J7L_021
HL_50779.2
HL_4W29_0221/AA/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.3
HL_4W29_2211/AA/1028:1028No text annotation
HL_4W29_0241/AA/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.3
HL_4W29_0251/AA/1089:1096No text annotation
homologous
HL_4LFB_025
HL_77436.3
HL_4W29_0261/AA/1134:1140No text annotation
homologous
HL_6CZR_097
NA
HL_4W29_0271/AA/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.3
HL_4W29_0281/AA/1265:1270No text annotation
homologous
HL_6CZR_099
NA
HL_4W29_0291/AA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.2
HL_4W29_0301/AA/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.2
HL_4W29_0311/AA/1440G:1440LUNCG
homologous
HL_4LFB_031
HL_34617.2
HL_4W29_0321/AA/1515:1520GNRA
homologous
HL_4LFB_032
HL_37824.3
HL_4W29_0331/AW/11:24No text annotation
homologous
HL_5UD5_001
HL_48417.2
HL_4W29_2221/AW/31:39tRNA anticodon loop
homologous
HL_2IY5_002
HL_83632.1
HL_4W29_0351/AW/53:61T-loop with 2 stacked bulged bases
homologous
HL_4V9K_035
HL_28252.2
HL_4W29_0361/AX/13:22No text annotation
homologous
HL_2IY5_001
NA
HL_4W29_0371/AX/31:39tRNA anticodon loop
homologous
HL_3TUP_002
HL_06059.2
HL_4W29_2331/AX/53:61No text annotation
HL_4W29_0391/BA/59:68No text annotation
homologous
HL_7RQB_001
NA
HL_4W29_0401/BA/87:95Pseudoknot geometry
homologous
HL_4WF9_002
HL_77600.1
HL_4W29_0411/BA/123:128No text annotation
homologous
HL_7A0S_003
HL_82710.2
HL_4W29_0421/BA/137A:137FNo text annotation
homologous
HL_7RQB_004
NA
HL_4W29_0431/BA/155:171GNRA
homologous
HL_7A0S_005
HL_37824.3
HL_4W29_0441/BA/194:201No text annotation
geometric
HL_4WF9_006
HL_30068.1
HL_4W29_0451/BA/225:230No text annotation
homologous
HL_7RQB_007
NA
HL_4W29_0461/BA/246:252No text annotation
homologous
HL_4WF9_008
HL_37369.1
HL_4W29_0471/BA/270J:270PNo text annotation
geometric
HL_4V88_198
NA
HL_4W29_0481/BA/305:312No text annotation
homologous
HL_7RQB_010
NA
HL_4W29_0491/BA/319:323No text annotation
homologous
HL_7RQB_011
NA
HL_4W29_0501/BA/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.1
HL_4W29_0511/BA/383:391No text annotation
HL_4W29_0521/BA/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.2
HL_4W29_0531/BA/462:467GNRA
homologous
HL_7RQB_015
NA
HL_4W29_0541/BA/487:493GNRA
homologous
HL_5J7L_148
HL_37824.3
HL_4W29_0551/BA/543:550UNCG variation
geometric
HL_1P6V_001
HL_53890.1
HL_4W29_0561/BA/566:575No text annotation
geometric
HL_2ZNI_001
HL_75660.2
HL_4W29_0571/BA/611A:611GNo text annotation
homologous
HL_7A0S_019
HL_47787.1
HL_4W29_0581/BA/629:634GNRA
homologous
HL_7RQB_020
NA
HL_4W29_0591/BA/641:647GNRA
geometric
HL_4V9F_045
HL_37824.3
HL_4W29_0601/BA/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_4W29_0611/BA/744:753No text annotation
homologous
HL_7RQB_023
NA
HL_4W29_0621/BA/779:785GNRA related
geometric
HL_2NUE_001
HL_53890.1
HL_4W29_0631/BA/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_4W29_0641/BA/884:892No text annotation
homologous
HL_7RQB_026
NA
HL_4W29_0651/BA/952:965No text annotation
HL_4W29_0661/BA/978:985No text annotation
homologous
HL_7RQB_028
NA
HL_4W29_0671/BA/1064:1074No text annotation
homologous
HL_6PRV_001
HL_19210.2
HL_4W29_0681/BA/1092:1099GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_81538.1
HL_4W29_0691/BA/1171:1178No text annotation
geometric
HL_6N5P_002
HL_49687.1
HL_4W29_0701/BA/1222:1227GNRA
homologous
HL_7RQB_032
NA
HL_4W29_0711/BA/1281:1289No text annotation
homologous
HL_7RQB_033
NA
HL_4W29_0721/BA/1324:1330No text annotation
homologous
HL_7RQB_034
NA
HL_4W29_0731/BA/1363:1368GNRA
homologous
HL_7RQB_035
NA
HL_4W29_0741/BA/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_4W29_0751/BA/1450:1461Pseudoknot
homologous
HL_7A0S_036
HL_93135.1
HL_4W29_0761/BA/1492:1498No text annotation
HL_4W29_0771/BA/1533:1538No text annotation
geometric
HL_4YAZ_004
HL_46878.1
HL_4W29_0781/BA/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_46878.1
HL_4W29_0791/BA/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_4W29_0801/BA/1630A:1635No text annotation
homologous
HL_7RQB_041
NA
HL_4W29_0811/BA/1691:1696UNCG
homologous
HL_7A0S_042
HL_34617.2
HL_4W29_0821/BA/1712F:1712LNo text annotation
homologous
HL_7RQB_043
NA
HL_4W29_0831/BA/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_4W29_0841/BA/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.1
HL_4W29_0851/BA/1806:1811GNRA
homologous
HL_7RQB_046
NA
HL_4W29_0861/BA/1864:1878GNRA
homologous
HL_7RQB_047
NA
HL_4W29_0871/BA/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_4W29_0881/BA/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_4W29_0891/BA/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_4W29_0901/BA/2143:2148No text annotation
homologous
HL_7RQB_051
NA
HL_4W29_0911/BA/2202B:2202GNo text annotation
geometric
HL_6U8D_003
HL_32346.1
HL_4W29_0921/BA/2248:2256No text annotation
geometric
HL_5TBW_044
NA
HL_4W29_0931/BA/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_4W29_0941/BA/2303:2313No text annotation
homologous
HL_4WF9_051
NA
HL_4W29_0951/BA/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4W29_0961/BA/2355:2362No text annotation
homologous
HL_7RQB_057
NA
HL_4W29_0971/BA/2374:2379GNRA
homologous
HL_5J7L_191
HL_37824.3
HL_4W29_0981/BA/2404:2413No text annotation
homologous
HL_4WF9_055
HL_53454.1
HL_4W29_0991/BA/2471:2479No text annotation
homologous
HL_7A0S_059
HL_32735.1
HL_4W29_1001/BA/2528:2535No text annotation
homologous
HL_5J7L_194
HL_31585.1
HL_4W29_1011/BA/2551:2557No text annotation
HL_4W29_1021/BA/2594:2599GNRA
homologous
HL_5J7L_196
HL_37824.3
HL_4W29_1031/BA/2658:2663GNRA related
geometric
HL_3OXE_002
HL_04783.2
HL_4W29_1041/BA/2701:2706No text annotation
homologous
HL_7RQB_065
NA
HL_4W29_1051/BA/2745:2759No text annotation
homologous
HL_4WF9_062
HL_74055.1
HL_4W29_1061/BA/2794:2802UNCG variation
geometric
HL_1P6V_001
HL_53890.1
HL_4W29_1071/BA/2819:2827No text annotation
homologous
HL_7RQB_068
NA
HL_4W29_1081/BA/2856:2861GNRA
homologous
HL_7A0S_068
HL_37824.3
HL_4W29_1091/BB/38:44No text annotation
homologous
HL_7RQB_070
NA
HL_4W29_1101/BB/86:90GNRA
homologous
HL_4V9F_072
HL_37824.3
HL_4W29_1111/CA/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.3
HL_4W29_1121/CA/68J:68PUNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4W29_1131/CA/158:163GNRA
homologous
HL_4LFB_003
HL_37824.3
HL_4W29_1141/CA/186F:186KNo text annotation
homologous
HL_4LFB_004
HL_48417.2
HL_4W29_1151/CA/201:216Externally structured
geometric
HL_8C3A_022
NA
HL_4W29_1161/CA/259:267GNRA related
homologous
HL_6CZR_077
HL_84299.1
HL_4W29_1171/CA/296:301GNRA
homologous
HL_4LFB_007
HL_37824.3
HL_4W29_1181/CA/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.2
HL_4W29_1191/CA/342:347UNCG
homologous
HL_5J7L_009
HL_34617.2
HL_4W29_1201/CA/379:384GNRA
homologous
HL_4LFB_010
HL_37824.3
HL_4W29_1211/CA/419:424UNCG
homologous
HL_4LFB_011
HL_34617.2
HL_4W29_1221/CA/458:474GNRA
homologous
HL_4LFB_012
HL_37824.3
HL_4W29_1231/CA/522:527No text annotation
geometric
HL_4V88_198
NA
HL_4W29_1241/CA/617:623No text annotation
homologous
HL_6CZR_085
HL_20554.2
HL_4W29_1251/CA/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.3
HL_4W29_1261/CA/726:731GNRA
homologous
HL_4LFB_016
HL_37824.3
HL_4W29_1271/CA/786:796No text annotation
homologous
HL_6CZR_088
HL_75293.3
HL_4W29_1281/CA/838:848No text annotation
homologous
HL_6CZR_089
HL_46878.1
HL_4W29_1291/CA/862:867GNRA
homologous
HL_4LFB_019
HL_37824.3
HL_4W29_1301/CA/897:902GNRA
homologous
HL_6CZR_091
HL_37824.3
HL_4W29_1311/CA/963:972No text annotation
homologous
HL_5J7L_021
HL_50779.2
HL_4W29_1321/CA/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.3
HL_4W29_1331/CA/1028B:1028GNo text annotation
HL_4W29_1341/CA/1076:1081GNRA
homologous
HL_6CZR_095
HL_37824.3
HL_4W29_1351/CA/1089:1096No text annotation
homologous
HL_6CZR_096
HL_77436.3
HL_4W29_1361/CA/1134:1140No text annotation
homologous
HL_6CZR_097
NA
HL_4W29_1371/CA/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.3
HL_4W29_1381/CA/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.3
HL_4W29_1391/CA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.2
HL_4W29_1401/CA/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.2
HL_4W29_2251/CA/1440:1440UNCG
homologous
HL_4LFB_031
HL_34617.2
HL_4W29_1421/CA/1515:1520GNRA variation
geometric
HL_4V88_222
NA
HL_4W29_2261/CW/12:23No text annotation
homologous
HL_6ORD_220
NA
HL_4W29_2271/CW/31:39tRNA anticodon loop
homologous
HL_3TUP_002
HL_06059.2
HL_4W29_1451/CW/53:61T-loop with 2 stacked bulged bases
homologous
HL_4V9K_035
HL_28252.2
HL_4W29_1461/CX/13:22No text annotation
homologous
HL_2IY5_001
NA
HL_4W29_1471/CX/31:39tRNA anticodon loop
homologous
HL_3WFS_002
HL_06059.2
HL_4W29_1481/CX/53:61T-loop with 2 stacked bulged bases
homologous
HL_6ORD_037
HL_28252.2
HL_4W29_1491/DA/59:68Pseudoknot with intercalation
homologous
HL_7A0S_001
HL_93438.1
HL_4W29_1501/DA/87:95Pseudoknot geometry
homologous
HL_4WF9_002
HL_77600.1
HL_4W29_1511/DA/123:128No text annotation
homologous
HL_7A0S_003
HL_82710.2
HL_4W29_1521/DA/137A:137FNo text annotation
homologous
HL_7RQB_004
NA
HL_4W29_1531/DA/155:171GNRA
homologous
HL_7A0S_005
HL_37824.3
HL_4W29_1541/DA/194:201No text annotation
geometric
HL_4WF9_006
HL_30068.1
HL_4W29_1551/DA/225:230No text annotation
homologous
HL_7RQB_007
NA
HL_4W29_1561/DA/246:252No text annotation
homologous
HL_7RQB_008
NA
HL_4W29_1571/DA/270J:270PNo text annotation
homologous
HL_4WF9_009
HL_81100.2
HL_4W29_1581/DA/305:312No text annotation
homologous
HL_7RQB_010
NA
HL_4W29_1591/DA/319:323No text annotation
homologous
HL_7RQB_011
NA
HL_4W29_1601/DA/327:335T-loop with unstacked turn
homologous
HL_7RQB_012
NA
HL_4W29_2281/DA/383:391No text annotation
HL_4W29_1621/DA/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.2
HL_4W29_1631/DA/462:467GNRA
homologous
HL_7RQB_015
NA
HL_4W29_1641/DA/487:493GNRA
homologous
HL_7RQB_016
NA
HL_4W29_2291/DA/543:550UNCG variation
geometric
HL_1P6V_001
HL_53890.1
HL_4W29_1661/DA/566:575No text annotation
geometric
HL_4WF9_011
HL_75660.2
HL_4W29_1671/DA/611A:611GNo text annotation
homologous
HL_7RQB_019
NA
HL_4W29_1681/DA/629:634GNRA
homologous
HL_7RQB_020
NA
HL_4W29_2301/DA/640:648No text annotation
HL_4W29_1691/DA/641:647No text annotation
HL_4W29_1701/DA/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_4W29_1711/DA/744:753No text annotation
homologous
HL_7RQB_023
NA
HL_4W29_1721/DA/779:785UNCG
geometric
HL_6JQ6_004
HL_34617.2
HL_4W29_1731/DA/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_4W29_1741/DA/884:892No text annotation
homologous
HL_9DFE_024
HL_39454.1
HL_4W29_2311/DA/952:965No text annotation
HL_4W29_1751/DA/954:963GNRA wlth tandem sheared
geometric
HL_1E8O_001
HL_81538.1
HL_4W29_1761/DA/978:985No text annotation
homologous
HL_7RQB_028
NA
HL_4W29_1771/DA/1064:1074No text annotation
homologous
HL_5J7L_161
HL_19210.2
HL_4W29_1781/DA/1092:1099No text annotation
homologous
HL_7RQB_030
NA
HL_4W29_1791/DA/1171:1178UNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4W29_1801/DA/1222:1227GNRA
homologous
HL_7RQB_032
NA
HL_4W29_1811/DA/1281:1289No text annotation
homologous
HL_7RQB_033
NA
HL_4W29_1821/DA/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_4WF9_033
HL_57176.1
HL_4W29_1831/DA/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.3
HL_4W29_1841/DA/1389:1398No text annotation
homologous
HL_5J7L_168
HL_81545.1
HL_4W29_1851/DA/1450:1461Pseudoknot
homologous
HL_7A0S_036
HL_93135.1
HL_4W29_1861/DA/1492:1498Mini UNCG
geometric
HL_5T16_002
HL_56334.1
HL_4W29_1871/DA/1533:1538UNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4W29_1881/DA/1565:1568Mini UNCG
homologous
HL_5J7L_172
HL_46878.1
HL_4W29_1891/DA/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_4W29_2321/DA/1630:1635No text annotation
homologous
HL_9DFE_039
HL_57176.1
HL_4W29_1911/DA/1691:1696No text annotation
homologous
HL_7RQB_042
NA
HL_4W29_1921/DA/1712F:1712LNo text annotation
homologous
HL_7RQB_043
NA
HL_4W29_1931/DA/1752:1756No text annotation
homologous
HL_5J7L_177
HL_80709.1
HL_4W29_1941/DA/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.1
HL_4W29_1951/DA/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_4W29_1961/DA/1864:1878GNRA
homologous
HL_7RQB_047
NA
HL_4W29_1971/DA/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_4W29_1991/DA/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_4W29_2001/DA/2143:2148No text annotation
homologous
HL_7RQB_051
NA
HL_4W29_2011/DA/2202B:2202GMini UNCG
geometric
HL_4QOZ_001
HL_56334.1
HL_4W29_2021/DA/2248:2256No text annotation
geometric
HL_2Y8Y_001
HL_81100.2
HL_4W29_2031/DA/2264:2276No text annotation
homologous
HL_7A0S_053
HL_91939.1
HL_4W29_2341/DA/2304:2312No text annotation
HL_4W29_2051/DA/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4W29_2061/DA/2355:2362No text annotation
homologous
HL_7RQB_057
NA
HL_4W29_2071/DA/2374:2379GNRA
homologous
HL_5J7L_191
HL_37824.3
HL_4W29_2081/DA/2404:2413No text annotation
homologous
HL_4WF9_055
HL_53454.1
HL_4W29_2091/DA/2471:2479No text annotation
homologous
HL_7A0S_059
HL_32735.1
HL_4W29_2101/DA/2528:2535No text annotation
homologous
HL_5J7L_194
HL_31585.1
HL_4W29_2111/DA/2551:2557No text annotation
geometric
HL_8VM8_002
HL_32346.1
HL_4W29_2121/DA/2594:2599GNRA
homologous
HL_5J7L_196
HL_37824.3
HL_4W29_2131/DA/2658:2663GNRA
homologous
HL_7RQB_064
NA
HL_4W29_2141/DA/2701:2706No text annotation
homologous
HL_7RQB_065
NA
HL_4W29_2151/DA/2745:2759No text annotation
homologous
HL_4WF9_062
HL_74055.1
HL_4W29_2161/DA/2794:2802UNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4W29_2171/DA/2819:2827No text annotation
homologous
HL_7RQB_068
NA
HL_4W29_2181/DA/2856:2861GNRA
homologous
HL_7RQB_069
NA
HL_4W29_2191/DB/38:44No text annotation
geometric
HL_5NFV_001
NA
HL_4W29_2201/DB/86:90UNCG variation
geometric
HL_2CZJ_007
HL_23696.2

Problematic loops

#loop idProblemSequence
HL_4W29_023No text annotation
HL_4W29_034No text annotation
HL_4W29_038No text annotation
HL_4W29_223No text annotation
HL_4W29_224tRNA D-loop
HL_4W29_141No text annotation
HL_4W29_143No text annotation
HL_4W29_144No text annotation
HL_4W29_161No text annotation
HL_4W29_165GNRA with extra cWW
HL_4W29_190No text annotation
HL_4W29_198No text annotation
HL_4W29_204No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4W29_0011/AA/30:32,
1/AA/552:553		Single bulged G
homologous
IL_4LFB_001
IL_00225.9
IL_4W29_3951/AA/44:45,
1/AA/396:398		Single bulged A
homologous
IL_5J7L_002
IL_31462.3
IL_4W29_0031/AA/47:52,
1/AA/359:361		No text annotation
homologous
IL_6CZR_115
IL_14177.1
IL_4W29_0041/AA/54:56,
1/AA/356:357		Minor groove platform
homologous
IL_5J7L_004
IL_58310.1
IL_4W29_0051/AA/63:66,
1/AA/103:104		Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.2
IL_4W29_0061/AA/67:68A,
1/AA/68Y:102		Isolated non-canonical cWW pair
homologous
IL_4LFB_006
IL_10289.1
IL_4W29_0091/AA/129:131,
1/AA/231:232		Multiple bulged bases
homologous
IL_4LFB_007
IL_92540.1
IL_4W29_0101/AA/132:136,
1/AA/227:230		No text annotation
homologous
IL_4LFB_008
IL_64231.3
IL_4W29_0111/AA/148:153,
1/AA/168:174		tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_51702.1
IL_4W29_0121/AA/186:186B,
1/AA/186O:191		Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_10289.1
IL_4W29_0131/AA/242:247,
1/AA/277:284		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.1
IL_4W29_0141/AA/249:252,
1/AA/274:275		No text annotation
homologous
IL_4LFB_012
IL_47074.1
IL_4W29_0151/AA/292:293,
1/AA/304:308		C-loop
homologous
IL_6CZR_125
IL_31461.3
IL_4W29_0161/AA/371:375,
1/AA/389:390		C-loop
homologous
IL_4LFB_015
IL_31461.3
IL_4W29_0171/AA/375:376,
1/AA/387:389		Single bulged G
geometric
IL_4LFB_016
IL_00225.9
IL_4W29_3961/AA/409:416,
1/AA/427:433		No text annotation
homologous
IL_4LFB_017
IL_28026.2
IL_4W29_0201/AA/446:450,
1/AA/483:488		6x5 Sarcin-Ricin; G-bulge
geometric
IL_4LFB_018
IL_88269.3
IL_4W29_0211/AA/450:455,
1/AA/477:483		No text annotation
homologous
IL_4LFB_019
IL_26564.1
IL_4W29_0221/AA/504:511,
1/AA/540:541		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.2
IL_4W29_0231/AA/515:521,
1/AA/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_4W29_0241/AA/569:575,
1/AA/880:881		No text annotation
homologous
IL_4LFB_022
IL_38186.4
IL_4W29_0261/AA/580:584,
1/AA/757:761		tSH-tHW-tHS
geometric
IL_4LFB_023
IL_17136.5
IL_4W29_0271/AA/594:596,
1/AA/644:645		Major groove platform
homologous
IL_4LFB_024
IL_48076.2
IL_4W29_0281/AA/597:598,
1/AA/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.2
IL_4W29_0291/AA/605:612,
1/AA/628:633		No text annotation
homologous
IL_4LFB_026
IL_78349.2
IL_4W29_0301/AA/654:655,
1/AA/751:754		Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_50694.5
IL_4W29_0311/AA/657:658,
1/AA/747:749		Major groove platform
homologous
IL_4LFB_028
IL_48076.2
IL_4W29_0321/AA/662:666,
1/AA/740:743		Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_68538.1
IL_4W29_0331/AA/673:677,
1/AA/713:717		Triple non-canonical cWW pairs
geometric
IL_5J7L_361
IL_49751.2
IL_4W29_0341/AA/683:688,
1/AA/699:707		No text annotation
homologous
IL_6CZR_143
IL_37722.1
IL_4W29_0351/AA/774:778,
1/AA/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.1
IL_4W29_0361/AA/779:783,
1/AA/799:803		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.5
IL_4W29_0371/AA/887:894,
1/AA/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.2
IL_4W29_0381/AA/922:923,
1/AA/1393:1395		Single bulged A
homologous
IL_4LFB_035
IL_31462.3
IL_4W29_0391/AA/925:927,
1/AA/1390:1391		Single bulged G
homologous
IL_5J7L_040
IL_00225.9
IL_4W29_0401/AA/933:935,
1/AA/1380:1384		Minor groove platform
homologous
IL_5J7L_041
IL_47078.2
IL_4W29_4411/AA/953:954,
1/AA/1226:1228		No text annotation
IL_4W29_0421/AA/993:997,
1/AA/1044:1045		Minor groove platform
homologous
IL_6CZR_151
IL_47078.2
IL_4W29_0431/AA/1048:1050,
1/AA/1208:1209		Single bulged U
homologous
IL_4LFB_042
IL_89505.1
IL_4W29_0441/AA/1052:1056,
1/AA/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.3
IL_4W29_0451/AA/1057:1058,
1/AA/1199:1203		Minor groove platform
homologous
IL_4LFB_045
IL_58310.1
IL_4W29_0461/AA/1060:1061,
1/AA/1195:1197		Single bulged U
homologous
IL_4LFB_046
IL_89505.1
IL_4W29_3981/AA/1060:1063,
1/AA/1193:1197		Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
NA
IL_4W29_0471/AA/1061:1063,
1/AA/1193:1195		Isolated non-canonical cWW pair
homologous
IL_4LFB_047
IL_10289.1
IL_4W29_0481/AA/1124:1127,
1/AA/1145:1149		No text annotation
IL_4W29_3991/AA/1124:1128,
1/AA/1143:1149		No text annotation
homologous
IL_4LFB_048
IL_85222.1
IL_4W29_0491/AA/1127:1128,
1/AA/1143:1145		Single stack bend
geometric
IL_7A0S_054
IL_06586.1
IL_4W29_0501/AA/1128:1132,
1/AA/1142:1143		Minor groove platform
geometric
IL_4LFB_049
IL_15052.3
IL_4W29_0511/AA/1158:1161,
1/AA/1175:1181		No text annotation
geometric
IL_4LFB_050
IL_42032.1
IL_4W29_0521/AA/1247:1253,
1/AA/1284:1290		No text annotation
homologous
IL_5J7L_054
IL_09129.1
IL_4W29_0531/AA/1255:1258,
1/AA/1277:1282		180 degree turn
homologous
IL_4LFB_052
IL_11344.1
IL_4W29_0541/AA/1259:1262,
1/AA/1273:1276		Double sheared
homologous
IL_4LFB_067
IL_09705.13
IL_4W29_0551/AA/1303:1308,
1/AA/1329:1334		No text annotation
geometric
IL_4LFB_055
IL_85536.1
IL_4W29_0561/AA/1399:1401,
1/AA/1501:1504		No text annotation
homologous
IL_6CZR_165
IL_61438.2
IL_4W29_0571/AA/1401:1404,
1/AA/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_4W29_0581/AA/1405:1409,
1/AA/1491:1496		No text annotation
homologous
IL_4LFB_058
NA
IL_4W29_0621/AA/1431:1435,
1/AA/1466:1469		UAA/GAN variation
geometric
IL_4LFB_062
IL_77691.4
IL_4W29_0631/AA/1435:1437,
1/AA/1464:1466		Isolated non-canonical cWW pair
homologous
IL_4LFB_063
IL_10289.1
IL_4W29_0641/AA/1440:1440E,
1/AA/1440N:1461		Isolated basepair with bulged bases
homologous
IL_6CZR_172
IL_97255.2
IL_4W29_0701/BA/24:30,
1/BA/510:516		Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA
IL_4W29_0711/BA/36:37,
1/BA/442:444		Single bulged A
homologous
IL_7A0S_002
IL_31462.3
IL_4W29_0721/BA/43:44,
1/BA/434:436		Minor groove platform
homologous
IL_7RQB_003
NA
IL_4W29_0731/BA/81:85,
1/BA/97:105		Kink-turn
homologous
IL_7RQB_004
NA
IL_4W29_0741/BA/183:184,
1/BA/212:214		Single stack bend
homologous
IL_5J7L_249
IL_06586.1
IL_4W29_0751/BA/188:194,
1/BA/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_250
IL_04346.9
IL_4W29_0761/BA/239:245,
1/BA/253:258		No text annotation
homologous
IL_9DFE_007
IL_48283.1
IL_4W29_0771/BA/271F:271G,
1/BA/357K:357M		Major groove platform
homologous
IL_7RQB_009
NA
IL_4W29_0791/BA/271S:283,
1/BA/357:357C		tSH-tHW
homologous
IL_7RQB_011
NA
IL_4W29_0781/BA/271L:271R,
1/BA/357D:357F		No text annotation
IL_4W29_0801/BA/287:290,
1/BA/350:353		Isolated tHS basepair with bulges
homologous
IL_7RQB_012
NA
IL_4W29_0811/BA/293:295,
1/BA/343:347		No text annotation
homologous
IL_5J7L_254
IL_69440.3
IL_4W29_0821/BA/481:484,
1/BA/496:509		No text annotation
homologous
IL_5J7L_255
IL_81516.1
IL_4W29_0831/BA/564:566,
1/BA/575:577		Isolated non-canonical cWW pair
homologous
IL_4WF9_017
IL_10289.1
IL_4W29_0841/BA/606:610,
1/BA/618:622		AAA cross-strand stack
homologous
IL_7RQB_016
NA
IL_4W29_0851/BA/672:674,
1/BA/806:808		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
IL_10289.1
IL_4W29_0861/BA/674:678,
1/BA/799:806		tHW-tHW cross-strand stack
homologous
IL_4WF9_021
IL_54041.1
IL_4W29_0871/BA/697:698,
1/BA/763:765		Single bulged A
homologous
IL_7A0S_016
IL_31462.3
IL_4W29_0881/BA/702:703,
1/BA/728:730		Single bulged G
geometric
IL_3SUX_001
IL_00225.9
IL_4W29_0891/BA/703:707,
1/BA/724:728		Triple sheared
homologous
IL_4WF9_024
IL_50730.1
IL_4W29_0901/BA/738:741,
1/BA/756:758		Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_4W29_0911/BA/775:777,
1/BA/787:791		Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.1
IL_4W29_0921/BA/837:838,
1/BA/940:942		Single stack bend
homologous
IL_7RQB_024
NA
IL_4W29_0931/BA/844:846,
1/BA/931:934		Intercalated cWW
geometric
IL_7RQB_025
NA
IL_4W29_0941/BA/846:850,
1/BA/928:931		No text annotation
homologous
IL_7RQB_026
NA
IL_4W29_0951/BA/858:862,
1/BA/915:919		5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_7RQB_027
NA
IL_4W29_0961/BA/862:863,
1/BA/913:915		Minor groove platform
geometric
IL_4V9F_034
IL_92540.1
IL_4W29_0971/BA/864:868,
1/BA/909:912		C-loop
homologous
IL_7RQB_029
NA
IL_4W29_4011/BA/875:877,
1/BA/899:902		No text annotation
homologous
IL_9DFE_030
IL_58579.2
IL_4W29_4021/BA/877:879,
1/BA/898:899		No text annotation
homologous
IL_9DFE_031
IL_58310.1
IL_4W29_1001/BA/880:881,
1/BA/895:897		No text annotation
homologous
IL_5J7L_275
NA
IL_4W29_4031/BA/994:996,
1/BA/1159:1160		No text annotation
homologous
IL_9DFE_034
IL_61258.14
IL_4W29_1021/BA/998:1002,
1/BA/1153:1157		UAA/GAN
homologous
IL_4WF9_036
IL_38507.1
IL_4W29_1031/BA/1004:1011,
1/BA/1150:1151		SSU/LSU pseudoknot
geometric
IL_7A0S_034
IL_41203.2
IL_4W29_1041/BA/1011:1013,
1/BA/1149:1150		Single bulged U
homologous
IL_5J7L_279
IL_89505.1
IL_4W29_1061/BA/1018:1024,
1/BA/1140:1144		Kink-turn related
homologous
IL_4WF9_039
IL_57188.5
IL_4W29_1071/BA/1024:1030,
1/BA/1124:1140		No text annotation
geometric
IL_7RQB_040
NA
IL_4W29_1081/BA/1031:1034,
1/BA/1121:1123		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
IL_37047.1
IL_4W29_1091/BA/1043:1051,
1/BA/1108:1112		Kink-turn
homologous
IL_5J7L_284
IL_99692.1
IL_4W29_1101/BA/1059:1062,
1/BA/1076:1079		No text annotation
IL_4W29_1111/BA/1087:1091,
1/BA/1100:1102		No text annotation
homologous
IL_7RQB_044
NA
IL_4W29_1121/BA/1196:1198,
1/BA/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
IL_42997.1
IL_4W29_1131/BA/1202:1206,
1/BA/1240:1243		No text annotation
IL_4W29_1141/BA/1208:1215,
1/BA/1234:1238		Kink-turn
homologous
IL_7RQB_047
NA
IL_4W29_1151/BA/1219:1220,
1/BA/1229:1230		Single bulged A
homologous
IL_7RQB_048
NA
IL_4W29_1161/BA/1262:1269,
1/BA/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA
IL_4W29_1171/BA/1310:1313,
1/BA/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_4W29_4041/BA/1319:1323,
1/BA/1331:1333		No text annotation
homologous
IL_9DFE_050
IL_63596.10
IL_4W29_1191/BA/1351:1355,
1/BA/1376:1380		UAA/GAN
homologous
IL_7RQB_052
NA
IL_4W29_1201/BA/1357:1361,
1/BA/1370:1374		tSH-tHW-tHS
homologous
IL_7RQB_053
NA
IL_4W29_1221/BA/1415:1416,
1/BA/1582:1587		No text annotation
homologous
IL_9DFE_053
IL_00881.1
IL_4W29_1231/BA/1417:1421,
1/BA/1577:1581		UAA/GAN
homologous
IL_5J7L_295
IL_38507.1
IL_4W29_1251/BA/1433:1435,
1/BA/1557:1560		Isolated tWW turn
homologous
IL_7RQB_056
NA
IL_4W29_1261/BA/1437:1440,
1/BA/1551:1555		tSH-tHW
homologous
IL_7RQB_057
NA
IL_4W29_1271/BA/1448:1449,
1/BA/1462:1463		Single stack bend
homologous
IL_7RQB_058
NA
IL_4W29_1291/BA/1468M:1483,
1/BA/1506:1506E		No text annotation
homologous
IL_7RQB_061
NA
IL_4W29_1281/BA/1468A:1468E,
1/BA/1506M:1506P		UAA/GAN
homologous
IL_7RQB_060
NA
IL_4W29_1301/BA/1489:1491,
1/BA/1499:1500		Single bulged A
homologous
IL_7RQB_062
NA
IL_4W29_4051/BA/1526:1530,
1/BA/1541:1546		No text annotation
homologous
IL_9DFE_062
IL_37333.1
IL_4W29_1321/BA/1651:1656,
1/BA/2004:2006		No text annotation
homologous
IL_4WF9_062
IL_12566.4
IL_4W29_1331/BA/1663:1665,
1/BA/1995:1997		Isolated tWW turn
homologous
IL_7RQB_065
NA
IL_4W29_1341/BA/1666:1669,
1/BA/1993:1994		Major groove platform; stack outside cWW
geometric
IL_5J7L_306
IL_50694.5
IL_4W29_4061/BA/1666:1674,
1/BA/1990:1994		No text annotation
homologous
IL_5J7L_386
IL_22854.3
IL_4W29_1351/BA/1669:1674,
1/BA/1990:1993		Intercalated tWH
homologous
IL_7A0S_062
IL_76758.1
IL_4W29_1361/BA/1686:1691,
1/BA/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA
IL_4W29_1371/BA/1770:1771,
1/BA/1980:1982		Single bulged A
homologous
IL_7RQB_069
NA
IL_4W29_1381/BA/1798:1804,
1/BA/1813:1821		Kink-turn related
homologous
IL_7A0S_065
IL_17069.5
IL_4W29_1391/BA/1837:1840,
1/BA/1902:1903		Major groove intercalation
homologous
IL_5J7L_314
IL_58310.1
IL_4W29_1401/BA/1841:1842,
1/BA/1898:1901		Major groove intercalation
homologous
IL_7A0S_067
IL_66635.2
IL_4W29_1411/BA/1846:1849,
1/BA/1893:1894		Minor groove platform
homologous
IL_7RQB_073
NA
IL_4W29_1421/BA/1851:1855,
1/BA/1887:1891		UAA/GAN with extra pair
homologous
IL_4WF9_073
IL_89021.2
IL_4W29_1431/BA/1856:1860,
1/BA/1882:1886		Triple sheared
homologous
IL_7RQB_075
NA
IL_4W29_1461/BA/2050:2052,
1/BA/2617:2618		Major groove platform
homologous
IL_7RQB_078
NA
IL_4W29_1471/BA/2054:2057,
1/BA/2611:2615		No text annotation
homologous
IL_7A0S_074
IL_70335.1
IL_4W29_1481/BA/2067:2069,
1/BA/2442:2443		Single bulged U
homologous
IL_7RQB_080
NA
IL_4W29_1491/BA/2070:2071,
1/BA/2438:2441		Minor groove platform
homologous
IL_7RQB_081
NA
IL_4W29_1501/BA/2081:2083,
1/BA/2236:2239		Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_4W29_1511/BA/2085:2087,
1/BA/2232:2234		Isolated non-canonical cWW pair
homologous
IL_7A0S_078
IL_10289.1
IL_4W29_1521/BA/2108:2110,
1/BA/2179:2181		Isolated non-canonical cWW pair
geometric
IL_6E7L_001
IL_10289.1
IL_4W29_1531/BA/2110:2120,
1/BA/2178:2179		No text annotation
homologous
IL_7RQB_085
NA
IL_4W29_1541/BA/2124:2127,
1/BA/2161:2174		No text annotation
homologous
IL_7RQB_086
NA
IL_4W29_1551/BA/2129:2136,
1/BA/2155:2159		Kink-turn
homologous
IL_5J7L_330
IL_70923.7
IL_4W29_1581/BA/2297:2299,
1/BA/2317:2321		Isolated tHS basepair with bulges
geometric
IL_7RQB_088
NA
IL_4W29_1591/BA/2350:2353,
1/BA/2364:2367		Double sheared
homologous
IL_7RQB_089
NA
IL_4W29_1601/BA/2401:2403,
1/BA/2414:2415		Single bulged U
homologous
IL_4WF9_088
IL_89505.1
IL_4W29_4081/BA/2453:2454,
1/BA/2498:2500		No text annotation
geometric
IL_8VTW_090
NA
IL_4W29_4091/BA/2453:2455,
1/BA/2496:2500		No text annotation
IL_4W29_1611/BA/2454:2455,
1/BA/2496:2498		Major groove platform
homologous
IL_7RQB_092
NA
IL_4W29_1621/BA/2457:2459,
1/BA/2493:2494		Major groove platform
homologous
IL_4WF9_091
IL_48076.2
IL_4W29_4101/BA/2457:2461,
1/BA/2489:2494		No text annotation
IL_4W29_1631/BA/2459:2461,
1/BA/2489:2493		Major groove minor groove platform with extra cWW
geometric
IL_7RQB_094
NA
IL_4W29_1641/BA/2466:2470,
1/BA/2480:2484		Triple sheared
homologous
IL_7RQB_095
NA
IL_4W29_1651/BA/2507:2508,
1/BA/2580:2582		Major groove platform
homologous
IL_7RQB_096
NA
IL_4W29_1661/BA/2510:2512,
1/BA/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_7A0S_089
IL_31091.1
IL_4W29_1671/BA/2512:2513,
1/BA/2571:2574		Multiple bulged bases
geometric
IL_7RQB_098
NA
IL_4W29_1681/BA/2522:2523,
1/BA/2540:2543		Major groove platform with intercalation
homologous
IL_7A0S_091
IL_09018.1
IL_4W29_1691/BA/2591:2592,
1/BA/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_4W29_4111/BA/2636:2640,
1/BA/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_4W29_1711/BA/2652:2658,
1/BA/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7RQB_103
NA
IL_4W29_1721/BA/2680:2684,
1/BA/2725:2727		C-loop
homologous
IL_5J7L_347
IL_63596.10
IL_4W29_1731/BA/2687:2691,
1/BA/2718:2722		No text annotation
homologous
IL_4WF9_102
IL_08296.5
IL_4W29_1741/BA/2695:2696,
1/BA/2711:2714		Multiple bulged bases
homologous
IL_7RQB_106
NA
IL_4W29_1751/BA/2737:2742,
1/BA/2762:2767		UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_49767.8
IL_4W29_1761/BA/2838:2839,
1/BA/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.2
IL_4W29_1771/BA/2843:2845,
1/BA/2871:2874		No text annotation
geometric
IL_4WF9_107
IL_31531.2
IL_4W29_1781/BA/2847:2852,
1/BA/2865:2869		tHS double platform
homologous
IL_7RQB_110
NA
IL_4W29_1811/BB/17:18,
1/BB/65:67		Major groove intercalation
homologous
IL_4WF9_112
IL_31462.3
IL_4W29_1831/BB/23:28,
1/BB/56:60		No text annotation
geometric
IL_5J7L_356
IL_18472.4
IL_4W29_1841/BB/30:31,
1/BB/51:54		Minor groove platform
homologous
IL_5TBW_374
NA
IL_4W29_1851/BB/34:38,
1/BB/44:48		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_4W29_1861/BB/71:79,
1/BB/97:105		Bacterial 5S Loop E
homologous
IL_7RQB_115
NA
IL_4W29_1881/CA/30:33,
1/CA/551:553		Isolated non-canonical cWW pair
geometric
IL_7A0S_026
IL_10289.1
IL_4W29_4131/CA/44:45,
1/CA/396:398		Single bulged A
homologous
IL_4LFB_002
IL_31462.3
IL_4W29_1901/CA/47:52,
1/CA/359:361		No text annotation
homologous
IL_6CZR_115
IL_14177.1
IL_4W29_1911/CA/54:56,
1/CA/356:357		Minor groove platform
homologous
IL_5J7L_004
IL_58310.1
IL_4W29_1921/CA/63:66,
1/CA/103:104		Multiple bulged bases
homologous
IL_6CZR_117
IL_82107.2
IL_4W29_1931/CA/67:68A,
1/CA/68Y:102		Isolated non-canonical cWW pair
homologous
IL_6CZR_118
IL_10289.1
IL_4W29_1951/CA/129:131,
1/CA/231:232		Multiple bulged bases
homologous
IL_6CZR_119
IL_92540.1
IL_4W29_1961/CA/132:136,
1/CA/227:230		No text annotation
homologous
IL_4LFB_008
IL_64231.3
IL_4W29_1971/CA/148:153,
1/CA/168:174		tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_51702.1
IL_4W29_1991/CA/186:186B,
1/CA/186O:191		Isolated non-canonical cWW pair
homologous
IL_6CZR_122
IL_10289.1
IL_4W29_2001/CA/242:247,
1/CA/277:284		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.1
IL_4W29_2011/CA/249:252,
1/CA/274:275		No text annotation
homologous
IL_4LFB_012
IL_47074.1
IL_4W29_2031/CA/292:293,
1/CA/304:308		C-loop
homologous
IL_5J7L_016
IL_31461.3
IL_4W29_2041/CA/367:369,
1/CA/392:393		Single bulged U
homologous
IL_5J7L_017
IL_89505.1
IL_4W29_2051/CA/371:375,
1/CA/389:390		C-loop
homologous
IL_6CZR_127
IL_31461.3
IL_4W29_2061/CA/375:376,
1/CA/387:389		Single bulged G
geometric
IL_4LFB_016
IL_00225.9
IL_4W29_4141/CA/409:416,
1/CA/427:433		No text annotation
homologous
IL_4LFB_017
IL_28026.2
IL_4W29_2091/CA/446:450,
1/CA/483:488		6x5 Sarcin-Ricin; G-bulge
homologous
IL_6CZR_130
IL_88269.3
IL_4W29_2101/CA/450:455,
1/CA/477:483		No text annotation
geometric
IL_4LFB_019
IL_26564.1
IL_4W29_2111/CA/504:511,
1/CA/540:541		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.2
IL_4W29_2121/CA/515:521,
1/CA/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_4W29_2131/CA/569:575,
1/CA/880:881		No text annotation
homologous
IL_4LFB_022
IL_38186.4
IL_4W29_2141/CA/580:584,
1/CA/757:761		tSH-tHW-tHS
homologous
IL_4LFB_023
IL_17136.5
IL_4W29_2151/CA/594:596,
1/CA/644:645		Major groove platform
homologous
IL_4LFB_024
IL_48076.2
IL_4W29_4151/CA/597:598,
1/CA/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.2
IL_4W29_2171/CA/605:612,
1/CA/628:633		No text annotation
homologous
IL_4LFB_026
IL_78349.2
IL_4W29_2181/CA/654:655,
1/CA/751:754		Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_50694.5
IL_4W29_2191/CA/657:658,
1/CA/747:749		Major groove platform
homologous
IL_4LFB_028
IL_48076.2
IL_4W29_2201/CA/662:666,
1/CA/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_68538.1
IL_4W29_4421/CA/673:677,
1/CA/713:717		No text annotation
IL_4W29_2221/CA/683:688,
1/CA/699:707		Kink-turn
homologous
IL_4LFB_031
IL_37722.1
IL_4W29_2241/CA/774:778,
1/CA/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.1
IL_4W29_2251/CA/779:783,
1/CA/799:803		tSH-tHW-tHS
homologous
IL_6CZR_145
IL_17136.5
IL_4W29_2261/CA/887:894,
1/CA/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.2
IL_4W29_2271/CA/922:923,
1/CA/1393:1395		Single bulged A
homologous
IL_5J7L_039
IL_31462.3
IL_4W29_2281/CA/925:927,
1/CA/1390:1391		Single bulged G
homologous
IL_4LFB_036
IL_00225.9
IL_4W29_2291/CA/933:935,
1/CA/1380:1384		Minor groove platform
homologous
IL_4LFB_037
IL_47078.2
IL_4W29_2301/CA/953:954,
1/CA/1226:1228		Minor groove platform
homologous
IL_4LFB_038
IL_92540.1
IL_4W29_2311/CA/993:997,
1/CA/1044:1045		Minor groove platform
homologous
IL_6CZR_151
IL_47078.2
IL_4W29_2341/CA/1048:1050,
1/CA/1208:1209		Single bulged U
homologous
IL_4LFB_042
IL_89505.1
IL_4W29_4181/CA/1052:1056,
1/CA/1204:1206		No text annotation
homologous
IL_6CZR_154
IL_76319.3
IL_4W29_2361/CA/1057:1058,
1/CA/1199:1203		Minor groove platform
homologous
IL_4LFB_045
IL_58310.1
IL_4W29_2371/CA/1060:1061,
1/CA/1195:1197		Single bulged U
geometric
IL_2PN3_003
IL_89505.1
IL_4W29_2381/CA/1061:1063,
1/CA/1193:1195		Isolated non-canonical cWW pair
homologous
IL_6CZR_157
IL_10289.1
IL_4W29_2411/CA/1124:1127,
1/CA/1145:1149		No text annotation
IL_4W29_4191/CA/1124:1128,
1/CA/1143:1149		No text annotation
homologous
IL_4LFB_048
IL_85222.1
IL_4W29_2421/CA/1127:1128,
1/CA/1143:1145		Single stack bend
geometric
IL_7KGA_003
NA
IL_4W29_2431/CA/1128:1132,
1/CA/1142:1143		Minor groove platform
homologous
IL_5J7L_052
IL_15052.3
IL_4W29_2441/CA/1158:1161,
1/CA/1175:1181		No text annotation
homologous
IL_4LFB_050
IL_42032.1
IL_4W29_2451/CA/1247:1253,
1/CA/1284:1290		No text annotation
homologous
IL_5J7L_054
IL_09129.1
IL_4W29_2461/CA/1255:1258,
1/CA/1277:1282		180 degree turn
homologous
IL_4LFB_052
IL_11344.1
IL_4W29_2471/CA/1259:1260,
1/CA/1274:1276		Not an internal loop
geometric
IL_4LFB_053
IL_58310.1
IL_4W29_4201/CA/1259:1262,
1/CA/1273:1276		Double sheared
homologous
IL_4LFB_067
IL_09705.13
IL_4W29_2481/CA/1260:1262,
1/CA/1273:1274		Minor groove platform
homologous
IL_4LFB_054
IL_58310.1
IL_4W29_2491/CA/1303:1308,
1/CA/1329:1334		No text annotation
homologous
IL_4LFB_055
IL_85536.1
IL_4W29_2501/CA/1399:1401,
1/CA/1501:1504		No text annotation
homologous
IL_5J7L_058
IL_61438.2
IL_4W29_2511/CA/1401:1404,
1/CA/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_4W29_2521/CA/1405:1407,
1/CA/1494:1496		Isolated non-canonical cWW pair
geometric
IL_4E48_004
IL_10289.1
IL_4W29_2531/CA/1407:1409,
1/CA/1491:1494		No text annotation
homologous
IL_4LFB_070
IL_31531.2
IL_4W29_2541/CA/1412:1414,
1/CA/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_10289.1
IL_4W29_2581/CA/1431:1435,
1/CA/1466:1469		UAA/GAN variation
homologous
IL_4LFB_062
IL_77691.4
IL_4W29_2591/CA/1435:1437,
1/CA/1464:1466		Isolated non-canonical cWW pair
geometric
IL_3RW6_004
IL_10289.1
IL_4W29_4211/CA/1440:1440,
1/CA/1440:1461		Isolated basepair with bulged bases
homologous
IL_6CZR_172
IL_97255.2
IL_4W29_2631/CW/50:52,
1/CW/62:64		No text annotation
IL_4W29_2661/DA/24:30,
1/DA/510:516		Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
IL_04021.1
IL_4W29_4231/DA/36:37,
1/DA/442:444		Single bulged A
homologous
IL_7A0S_002
IL_31462.3
IL_4W29_2681/DA/43:44,
1/DA/434:436		Minor groove platform
homologous
IL_7A0S_003
IL_92540.1
IL_4W29_2691/DA/81:85,
1/DA/97:105		Kink-turn
homologous
IL_7RQB_004
NA
IL_4W29_2701/DA/183:184,
1/DA/212:214		Single stack bend
homologous
IL_4WF9_007
IL_06586.1
IL_4W29_2721/DA/188:194,
1/DA/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_250
IL_04346.9
IL_4W29_2731/DA/239:245,
1/DA/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA
IL_4W29_2741/DA/271F:271G,
1/DA/357K:357M		Major groove platform
homologous
IL_7RQB_009
NA
IL_4W29_4401/DA/271L:271Q,
1/DA/357E:357F		No text annotation
IL_4W29_2761/DA/271S:283,
1/DA/357:357C		tSH-tHW
homologous
IL_7RQB_011
NA
IL_4W29_2771/DA/287:290,
1/DA/350:353		Isolated tHS basepair with bulges
homologous
IL_7RQB_012
NA
IL_4W29_2781/DA/293:295,
1/DA/343:347		No text annotation
homologous
IL_7RQB_013
NA
IL_4W29_2791/DA/481:484,
1/DA/496:509		No text annotation
homologous
IL_7A0S_009
IL_81516.1
IL_4W29_2811/DA/564:566,
1/DA/575:577		Isolated non-canonical cWW pair
homologous
IL_4WF9_017
IL_10289.1
IL_4W29_2821/DA/606:610,
1/DA/618:622		AAA cross-strand stack
homologous
IL_7RQB_016
NA
IL_4W29_2831/DA/672:674,
1/DA/806:808		Isolated non-canonical cWW pair
geometric
IL_7A0S_026
IL_10289.1
IL_4W29_2841/DA/674:678,
1/DA/799:806		tHW-tHW cross-strand stack
homologous
IL_4WF9_021
IL_54041.1
IL_4W29_2851/DA/697:698,
1/DA/763:765		Single bulged A
homologous
IL_5J7L_261
IL_31462.3
IL_4W29_2861/DA/702:707,
1/DA/724:730		No text annotation
geometric
IL_4V88_462
NA
IL_4W29_2871/DA/738:741,
1/DA/756:758		Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_4W29_2881/DA/775:777,
1/DA/787:791		Multiple bulged bases
homologous
IL_7RQB_023
NA
IL_4W29_2891/DA/837:838,
1/DA/940:942		Single stack bend
homologous
IL_7A0S_022
IL_68541.2
IL_4W29_2901/DA/844:846,
1/DA/931:934		Intercalated cWW
homologous
IL_7RQB_025
NA
IL_4W29_4241/DA/844:852,
1/DA/925:934		No text annotation
IL_4W29_2911/DA/846:850,
1/DA/928:931		No text annotation
geometric
IL_7RQB_026
NA
IL_4W29_4251/DA/846:852,
1/DA/925:931		No text annotation
IL_4W29_4261/DA/857:862,
1/DA/915:920		5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_7A0S_027
NA
IL_4W29_2931/DA/858:862,
1/DA/915:919		5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_7RQB_027
NA
IL_4W29_2941/DA/862:863,
1/DA/913:915		Minor groove platform
geometric
IL_6DLR_003
IL_92540.1
IL_4W29_2951/DA/864:868,
1/DA/909:912		C-loop
geometric
IL_1KOG_007
IL_63596.10
IL_4W29_2971/DA/870:872,
1/DA/905:907		Isolated cWS basepair
geometric
IL_7RQB_030
NA
IL_4W29_2981/DA/875:877,
1/DA/899:902		Minor groove platform with extra cWW
homologous
IL_7RQB_031
NA
IL_4W29_2991/DA/877:879,
1/DA/898:899		Not an internal loop
geometric
IL_4LFB_053
IL_58310.1
IL_4W29_4271/DA/877:880,
1/DA/897:899		No text annotation
homologous
IL_9DFE_030
IL_58579.2
IL_4W29_4281/DA/880:881,
1/DA/895:897		No text annotation
IL_4W29_3011/DA/952:954,
1/DA/963:965		No text annotation
geometric
IL_7RQB_034
NA
IL_4W29_3021/DA/994:996,
1/DA/1159:1160		Single bulged C
homologous
IL_4WF9_035
IL_61258.14
IL_4W29_3031/DA/998:1002,
1/DA/1153:1157		UAA/GAN
homologous
IL_7RQB_036
NA
IL_4W29_3041/DA/1004:1013,
1/DA/1149:1151		Isolated cWH basepair
geometric
IL_5F5F_003
IL_10167.3
IL_4W29_3051/DA/1018:1024,
1/DA/1140:1144		Kink-turn related
homologous
IL_4WF9_039
IL_57188.5
IL_4W29_3061/DA/1024:1030,
1/DA/1124:1140		No text annotation
geometric
IL_7RQB_040
NA
IL_4W29_3071/DA/1031:1034,
1/DA/1121:1123		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
IL_37047.1
IL_4W29_3081/DA/1043:1051,
1/DA/1108:1112		Kink-turn
homologous
IL_5J7L_284
IL_99692.1
IL_4W29_4291/DA/1043:1052,
1/DA/1107:1112		No text annotation
IL_4W29_3101/DA/1059:1062,
1/DA/1076:1079		No text annotation
IL_4W29_3111/DA/1087:1091,
1/DA/1100:1102		No text annotation
homologous
IL_7RQB_044
NA
IL_4W29_4301/DA/1196:1198,
1/DA/1247:1250		Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.1
IL_4W29_3131/DA/1202:1206,
1/DA/1240:1243		No text annotation
homologous
IL_7RQB_046
NA
IL_4W29_3141/DA/1208:1215,
1/DA/1234:1238		Kink-turn
homologous
IL_7A0S_043
IL_70923.7
IL_4W29_3151/DA/1219:1220,
1/DA/1229:1230		Single bulged A
homologous
IL_7RQB_048
NA
IL_4W29_3161/DA/1262:1270,
1/DA/2010:2017		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_84694.1
IL_4W29_3171/DA/1310:1313,
1/DA/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_4W29_4311/DA/1319:1323,
1/DA/1331:1333		No text annotation
homologous
IL_9DFE_050
IL_63596.10
IL_4W29_3201/DA/1351:1355,
1/DA/1376:1380		UAA/GAN
homologous
IL_7RQB_052
NA
IL_4W29_3211/DA/1357:1361,
1/DA/1370:1374		tSH-tHW-tHS
homologous
IL_4WF9_052
IL_17136.5
IL_4W29_4431/DA/1415:1416,
1/DA/1582:1587		No text annotation
IL_4W29_3231/DA/1417:1421,
1/DA/1577:1581		UAA/GAN
geometric
IL_5J7L_295
IL_38507.1
IL_4W29_3241/DA/1433:1435,
1/DA/1557:1560		Isolated tWW turn
homologous
IL_7RQB_056
NA
IL_4W29_3251/DA/1437:1440,
1/DA/1551:1555		tSH-tHW
homologous
IL_7RQB_057
NA
IL_4W29_3261/DA/1448:1449,
1/DA/1462:1463		Single stack bend
homologous
IL_7RQB_058
NA
IL_4W29_3281/DA/1468M:1483,
1/DA/1506:1506E		No text annotation
IL_4W29_3271/DA/1468A:1468E,
1/DA/1506M:1506P		UAA/GAN
homologous
IL_7RQB_060
NA
IL_4W29_3291/DA/1489:1491,
1/DA/1499:1500		Single bulged A
homologous
IL_7RQB_062
NA
IL_4W29_3301/DA/1526:1531,
1/DA/1540:1546		No text annotation
IL_4W29_3321/DA/1651:1656,
1/DA/2004:2006		No text annotation
homologous
IL_7RQB_064
NA
IL_4W29_3331/DA/1663:1665,
1/DA/1995:1997		Isolated tWW turn
homologous
IL_4WF9_063
IL_67095.1
IL_4W29_4331/DA/1665:1669,
1/DA/1993:1995		No text annotation
IL_4W29_3341/DA/1666:1669,
1/DA/1993:1994		Major groove platform; stack outside cWW
homologous
IL_5J7L_306
IL_50694.5
IL_4W29_3351/DA/1686:1691,
1/DA/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_5J7L_308
IL_48283.1
IL_4W29_3361/DA/1770:1771,
1/DA/1980:1982		Single bulged A
homologous
IL_7RQB_069
NA
IL_4W29_3371/DA/1798:1804,
1/DA/1813:1821		Kink-turn related
homologous
IL_7A0S_065
IL_17069.5
IL_4W29_3381/DA/1837:1840,
1/DA/1902:1903		Major groove intercalation
homologous
IL_5J7L_314
IL_58310.1
IL_4W29_3391/DA/1841:1842,
1/DA/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.2
IL_4W29_3401/DA/1846:1849,
1/DA/1893:1894		Minor groove platform
homologous
IL_7RQB_073
NA
IL_4W29_3411/DA/1851:1855,
1/DA/1887:1891		UAA/GAN with extra pair
homologous
IL_4WF9_073
IL_89021.2
IL_4W29_3421/DA/1856:1860,
1/DA/1882:1886		Triple sheared
homologous
IL_7RQB_075
NA
IL_4W29_3461/DA/2050:2052,
1/DA/2617:2618		Major groove platform
homologous
IL_7A0S_073
IL_48076.2
IL_4W29_3481/DA/2067:2069,
1/DA/2442:2443		Single bulged U
homologous
IL_7RQB_080
NA
IL_4W29_3491/DA/2070:2071,
1/DA/2438:2441		Minor groove platform
homologous
IL_5J7L_324
IL_92540.1
IL_4W29_3501/DA/2081:2083,
1/DA/2236:2239		Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_4W29_3511/DA/2085:2087,
1/DA/2232:2234		No text annotation
homologous
IL_7RQB_083
NA
IL_4W29_3521/DA/2108:2110,
1/DA/2179:2181		Isolated non-canonical cWW
geometric
IL_4WF9_018
IL_10289.1
IL_4W29_3531/DA/2110:2120,
1/DA/2178:2179		No text annotation
homologous
IL_7RQB_085
NA
IL_4W29_3541/DA/2124:2127,
1/DA/2161:2174		No text annotation
homologous
IL_3U4M_003
IL_75283.2
IL_4W29_4351/DA/2129:2136,
1/DA/2155:2159		Kink-turn
homologous
IL_5J7L_330
IL_70923.7
IL_4W29_3591/DA/2297:2299,
1/DA/2317:2321		Isolated tHS basepair with bulges
homologous
IL_7RQB_088
NA
IL_4W29_4361/DA/2350:2353,
1/DA/2364:2367		No text annotation
homologous
IL_9DFE_089
IL_09705.13
IL_4W29_3621/DA/2401:2403,
1/DA/2414:2415		Single bulged U
homologous
IL_5J7L_334
IL_89505.1
IL_4W29_3631/DA/2453:2454,
1/DA/2498:2500		Single stack bend
geometric
IL_7RQB_091
NA
IL_4W29_3641/DA/2454:2455,
1/DA/2496:2498		Major groove platform
homologous
IL_7RQB_092
NA
IL_4W29_3651/DA/2457:2459,
1/DA/2493:2494		Major groove platform
geometric
IL_4WF9_091
IL_48076.2
IL_4W29_4371/DA/2457:2461,
1/DA/2489:2494		No text annotation
IL_4W29_3661/DA/2459:2461,
1/DA/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
NA
IL_4W29_3671/DA/2466:2470,
1/DA/2480:2484		Triple sheared
homologous
IL_5J7L_338
IL_17948.1
IL_4W29_3681/DA/2507:2508,
1/DA/2580:2582		Major groove platform
homologous
IL_7A0S_088
IL_07039.1
IL_4W29_3691/DA/2510:2512,
1/DA/2574:2578		Isolated non-canonical cWW with bulges
geometric
IL_4WF9_095
IL_31091.1
IL_4W29_3701/DA/2512:2513,
1/DA/2571:2574		Multiple bulged bases
homologous
IL_7A0S_090
IL_42626.1
IL_4W29_3711/DA/2522:2523,
1/DA/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_09018.1
IL_4W29_3741/DA/2591:2592,
1/DA/2601:2603		Single bulged A
geometric
IL_4R4V_003
IL_31462.3
IL_4W29_3761/DA/2636:2640,
1/DA/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_4W29_4381/DA/2651:2658,
1/DA/2663:2669		8x7 Sarcin-Ricin; G-bulge
geometric
IL_8C3A_148
IL_04346.9
IL_4W29_3781/DA/2652:2658,
1/DA/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7A0S_094
IL_16458.4
IL_4W29_3791/DA/2680:2684,
1/DA/2725:2727		C-loop
homologous
IL_5J7L_347
IL_63596.10
IL_4W29_3801/DA/2687:2691,
1/DA/2718:2722		No text annotation
homologous
IL_7RQB_105
NA
IL_4W29_3811/DA/2695:2696,
1/DA/2711:2714		Multiple bulged bases
homologous
IL_7A0S_097
IL_42626.1
IL_4W29_3821/DA/2737:2742,
1/DA/2762:2767		UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_49767.8
IL_4W29_3831/DA/2838:2839,
1/DA/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.2
IL_4W29_3841/DA/2843:2846,
1/DA/2870:2874		No text annotation
homologous
IL_7RQB_109
NA
IL_4W29_3851/DA/2847:2852,
1/DA/2865:2869		tHS double platform
homologous
IL_7RQB_110
NA
IL_4W29_3861/DB/2:4,
1/DB/116:118		No text annotation
IL_4W29_3871/DB/17:18,
1/DB/65:67		Major groove intercalation
homologous
IL_4V9F_101
IL_31462.3
IL_4W29_3891/DB/23:28,
1/DB/56:60		No text annotation
geometric
IL_5J7L_356
IL_18472.4
IL_4W29_4391/DB/30:31,
1/DB/51:54		No text annotation
homologous
IL_8C3A_145
IL_15052.3
IL_4W29_4441/DB/34:38,
1/DB/44:48		No text annotation
IL_4W29_3921/DB/71:79,
1/DB/97:105		Bacterial 5S Loop E
homologous
IL_7A0S_106
IL_56455.6

Problematic loops

#loop idProblemSequence
IL_4W29_002Other IL
IL_4W29_007Isolated cWS basepair
IL_4W29_008No text annotation
IL_4W29_018Isolated non-canonical cWW pair
IL_4W29_019No text annotation
IL_4W29_025Isolated non-canonical cWW pair
IL_4W29_397No text annotation
IL_4W29_041No text annotation
IL_4W29_059Isolated non-canonical cWW pair
IL_4W29_060Double sheared
IL_4W29_061Isolated non-canonical cWW pair
IL_4W29_065No text annotation
IL_4W29_066No text annotation
IL_4W29_067No text annotation
IL_4W29_068Tandem non-canonical cWW pairs
IL_4W29_069No text annotation
IL_4W29_400No text annotation
IL_4W29_098Tandem non-canonical cWW pairs
IL_4W29_099Triple sheared
IL_4W29_101Isolated non-canonical cWW pair
IL_4W29_105Isolated non-canonical cWW pair
IL_4W29_118C-loop with extra cWW pair
IL_4W29_121Isolated non-canonical cWW pair
IL_4W29_124Isolated non-canonical cWW pair
IL_4W29_131No text annotation
IL_4W29_144Bulged stacked bases
IL_4W29_407No text annotation
IL_4W29_145No text annotation
IL_4W29_156No text annotation
IL_4W29_157Isolated non-canonical cWW pair
IL_4W29_170No text annotation
IL_4W29_412No text annotation
IL_4W29_179No text annotation
IL_4W29_180Isolated non-canonical cWW pair
IL_4W29_182Isolated non-canonical cWW pair
IL_4W29_187Isolated non-canonical cWW
IL_4W29_189Isolated non-canonical cWW
IL_4W29_194No text annotation
IL_4W29_198Isolated non-canonical cWW pair
IL_4W29_202Isolated non-canonical cWW pair
IL_4W29_207Isolated non-canonical cWW pair
IL_4W29_208No text annotation
IL_4W29_216No text annotation
IL_4W29_416No text annotation
IL_4W29_221No text annotation
IL_4W29_223No text annotation
IL_4W29_417No text annotation
IL_4W29_232Isolated non-canonical cWW pair
IL_4W29_233No text annotation
IL_4W29_235Tandem non-canonical cWW pairs
IL_4W29_239Partly complementary
IL_4W29_240No text annotation
IL_4W29_255Double sheared
IL_4W29_256Isolated non-canonical cWW pair
IL_4W29_257Isolated non-canonical cWW pair
IL_4W29_260No text annotation
IL_4W29_261No text annotation
IL_4W29_262No text annotation
IL_4W29_264No text annotation
IL_4W29_265Self complementary
IL_4W29_422No text annotation
IL_4W29_267Isolated non-canonical cWW pair
IL_4W29_271Isolated non-canonical cWW pair
IL_4W29_275No text annotation
IL_4W29_280No text annotation
IL_4W29_292Isolated non-canonical cWW pair
IL_4W29_296Isolated non-canonical cWW pair
IL_4W29_300No text annotation
IL_4W29_309No text annotation
IL_4W29_312No text annotation
IL_4W29_318Tandem non-canonical cWW pairs
IL_4W29_319C-loop with extra cWW pair
IL_4W29_432No text annotation
IL_4W29_322No text annotation
IL_4W29_331Isolated non-canonical cWW pair
IL_4W29_343Bulged stacked bases
IL_4W29_434No text annotation
IL_4W29_344No text annotation
IL_4W29_345Isolated non-canonical cWW pair
IL_4W29_347No text annotation
IL_4W29_355No text annotation
IL_4W29_356Isolated non-canonical cWW pair
IL_4W29_357Isolated non-canonical cWW pair
IL_4W29_358Isolated non-canonical cWW pair
IL_4W29_360Triple sheared
IL_4W29_361No text annotation
IL_4W29_372Isolated non-canonical cWW pair
IL_4W29_373Isolated non-canonical cWW pair
IL_4W29_375No text annotation
IL_4W29_377Isolated non-canonical cWW pair
IL_4W29_388Isolated non-canonical cWW pair
IL_4W29_390No text annotation
IL_4W29_391No text annotation
IL_4W29_393Isolated non-canonical cWW
IL_4W29_394Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4W29_0341/AA/46:47,
1/AA/361:369,
1/AA/392:395		No text annotation
J3_4W29_0351/AA/46:52,
1/AA/359:369,
1/AA/392:395		No text annotation
J3_4W29_0361/AA/586:588,
1/AA/651:654,
1/AA/754:755		No text annotation
geometric
J3_4LFB_011
NA
J3_4W29_0371/AA/586:588,
1/AA/651:655,
1/AA/751:755		No text annotation
homologous
J3_4LFB_015
NA
J3_4W29_0381/AA/672:673,
1/AA/717:725,
1/AA/732:734		No text annotation
homologous
J3_4LFB_012
NA
J3_4W29_0011/AA/826:829,
1/AA/857:861,
1/AA/868:874		No text annotation
homologous
J3_4LFB_001
NA
J3_4W29_0391/AA/936:939,
1/AA/1344:1350,
1/AA/1372:1379		No text annotation
homologous
J3_4LFB_002
NA
J3_4W29_0021/AA/941:946,
1/AA/1235:1237,
1/AA/1337:1342		No text annotation
J3_4W29_0781/AA/942:946,
1/AA/1235:1237,
1/AA/1337:1341		No text annotation
J3_4W29_0031/AA/955:962,
1/AA/973:984,
1/AA/1221:1225		No text annotation
homologous
J3_4LFB_004
NA
J3_4W29_0041/AA/990:993,
1/AA/1045:1047,
1/AA/1210:1215		No text annotation
homologous
J3_4LFB_005
NA
J3_4W29_0401/AA/990:997,
1/AA/1044:1047,
1/AA/1210:1215		No text annotation
homologous
J3_5J7L_053
NA
J3_4W29_0411/AA/1003:1006,
1/AA/1023:1027,
1/AA/1034:1037		No text annotation
J3_4W29_0061/AA/1063:1068,
1/AA/1107:1113,
1/AA/1187:1193		No text annotation
homologous
J3_4LFB_007
NA
J3_4W29_0421/AA/1073:1074,
1/AA/1083:1087,
1/AA/1098:1102		No text annotation
homologous
J3_6CZR_024
NA
J3_4W29_0071/AA/1116:1118,
1/AA/1155:1158,
1/AA/1181:1184		No text annotation
homologous
J3_5J7L_010
NA
J3_4W29_0431/AA/1116:1118,
1/AA/1155:1161,
1/AA/1175:1184		No text annotation
homologous
J3_4LFB_018
NA
J3_4W29_0081/AA/1237:1241,
1/AA/1296:1303,
1/AA/1334:1337		No text annotation
homologous
J3_4LFB_009
NA
J3_4W29_0441/BA/30:31,
1/BA/474:481,
1/BA/509:510		No text annotation
geometric
J3_7A0S_001
NA
J3_4W29_0451/BA/30:31,
1/BA/474:484,
1/BA/496:510		No text annotation
homologous
J3_4WF9_011
NA
J3_4W29_0461/BA/32:35,
1/BA/445:461,
1/BA/468:473		No text annotation
homologous
J3_9DFE_003
NA
J3_4W29_0471/BA/56:57,
1/BA/70:76,
1/BA/110:114		No text annotation
homologous
J3_7A0S_002
NA
J3_4W29_0481/BA/271:271,
1/BA/357:375,
1/BA/399:404		No text annotation
J3_4W29_0091/BA/683:689,
1/BA/773:775,
1/BA/791:794		No text annotation
homologous
J3_7RQB_004
NA
J3_4W29_0101/BA/698:700,
1/BA/732:736,
1/BA/760:763		No text annotation
homologous
J3_7A0S_005
NA
J3_4W29_0111/BA/1055:1057,
1/BA/1081:1087,
1/BA/1102:1104		No text annotation
homologous
J3_5J7L_040
NA
J3_4W29_0121/BA/1298:1303,
1/BA/1625:1627,
1/BA/1639:1642		No text annotation
homologous
J3_7RQB_007
NA
J3_4W29_0131/BA/1306:1309,
1/BA/1605:1611,
1/BA/1620:1622		No text annotation
homologous
J3_7RQB_008
NA
J3_4W29_0491/BA/1344:1350,
1/BA/1381:1385,
1/BA/1402:1403		No text annotation
homologous
J3_9DFE_012
NA
J3_4W29_0501/BA/1424:1429,
1/BA/1564:1565,
1/BA/1568:1574		No text annotation
homologous
J3_4WF9_017
NA
J3_4W29_0141/BA/2091:2093,
1/BA/2196:2200,
1/BA/2223:2228		No text annotation
homologous
J3_7RQB_010
NA
J3_4W29_0511/BA/2282:2284,
1/BA/2384:2395,
1/BA/2421:2427		No text annotation
homologous
J3_7A0S_020
NA
J3_4W29_0151/BA/2295:2297,
1/BA/2321:2323,
1/BA/2332:2337		No text annotation
homologous
J3_7RQB_011
NA
J3_4W29_0161/BA/2517:2520,
1/BA/2545:2547,
1/BA/2561:2567		No text annotation
homologous
J3_4WF9_009
NA
J3_4W29_0521/BA/2814:2815,
1/BA/2831:2836,
1/BA/2882:2886		No text annotation
homologous
J3_9DFE_019
NA
J3_4W29_0531/BB/11:16,
1/BB/68:69,
1/BB/107:109		No text annotation
homologous
J3_9DFE_020
NA
J3_4W29_0541/CA/46:47,
1/CA/361:367,
1/CA/393:395		No text annotation
geometric
J3_4LFB_010
NA
J3_4W29_0551/CA/46:52,
1/CA/359:367,
1/CA/393:395		No text annotation
homologous
J3_4LFB_014
NA
J3_4W29_0561/CA/586:588,
1/CA/651:654,
1/CA/754:755		No text annotation
geometric
J3_1KUQ_001
NA
J3_4W29_0571/CA/586:588,
1/CA/651:655,
1/CA/751:755		No text annotation
homologous
J3_4LFB_015
NA
J3_4W29_0581/CA/672:673,
1/CA/717:725,
1/CA/732:734		No text annotation
homologous
J3_4LFB_012
NA
J3_4W29_0171/CA/826:829,
1/CA/857:861,
1/CA/868:874		No text annotation
homologous
J3_4LFB_001
NA
J3_4W29_0181/CA/936:939,
1/CA/1344:1350,
1/CA/1372:1379		No text annotation
homologous
J3_4LFB_002
NA
J3_4W29_0591/CA/943:946,
1/CA/1235:1237,
1/CA/1337:1340		No text annotation
homologous
J3_4LFB_003
NA
J3_4W29_0201/CA/955:962,
1/CA/973:984,
1/CA/1221:1225		No text annotation
homologous
J3_4LFB_004
NA
J3_4W29_0211/CA/990:993,
1/CA/1045:1047,
1/CA/1210:1215		No text annotation
homologous
J3_4LFB_005
NA
J3_4W29_0601/CA/990:997,
1/CA/1044:1047,
1/CA/1210:1215		No text annotation
homologous
J3_5J7L_053
NA
J3_4W29_0791/CA/1003:1006,
1/CA/1023:1027,
1/CA/1034:1037		No text annotation
J3_4W29_0621/CA/1061:1068,
1/CA/1107:1113,
1/CA/1187:1195		No text annotation
J3_4W29_0231/CA/1063:1068,
1/CA/1107:1113,
1/CA/1187:1193		No text annotation
J3_4W29_0631/CA/1073:1074,
1/CA/1083:1087,
1/CA/1098:1102		No text annotation
homologous
J3_6CZR_024
NA
J3_4W29_0241/CA/1116:1118,
1/CA/1155:1158,
1/CA/1181:1184		No text annotation
homologous
J3_4LFB_008
NA
J3_4W29_0641/CA/1116:1118,
1/CA/1155:1161,
1/CA/1175:1184		No text annotation
homologous
J3_4LFB_018
NA
J3_4W29_0251/CA/1237:1241,
1/CA/1296:1303,
1/CA/1334:1337		No text annotation
J3_4W29_0651/CA/1237:1242,
1/CA/1295:1303,
1/CA/1334:1337		No text annotation
J3_4W29_0661/DA/30:31,
1/DA/474:481,
1/DA/509:510		No text annotation
geometric
J3_7A0S_001
NA
J3_4W29_0671/DA/30:31,
1/DA/474:484,
1/DA/496:510		No text annotation
homologous
J3_4WF9_011
NA
J3_4W29_0681/DA/32:35,
1/DA/445:461,
1/DA/468:473		No text annotation
homologous
J3_9DFE_003
NA
J3_4W29_0801/DA/56:57,
1/DA/70:76,
1/DA/110:114		No text annotation
J3_4W29_0701/DA/271:271,
1/DA/357:375,
1/DA/399:404		No text annotation
J3_4W29_0711/DA/683:689,
1/DA/773:775,
1/DA/791:794		No text annotation
homologous
J3_9DFE_007
NA
J3_4W29_0271/DA/698:700,
1/DA/732:736,
1/DA/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_4W29_0281/DA/1054:1057,
1/DA/1081:1087,
1/DA/1102:1105		No text annotation
geometric
J3_8VTW_042
NA
J3_4W29_0291/DA/1298:1303,
1/DA/1625:1627,
1/DA/1639:1642		No text annotation
homologous
J3_7RQB_007
NA
J3_4W29_0301/DA/1306:1309,
1/DA/1605:1611,
1/DA/1620:1622		No text annotation
homologous
J3_7RQB_008
NA
J3_4W29_0721/DA/1344:1350,
1/DA/1381:1385,
1/DA/1402:1403		No text annotation
homologous
J3_9DFE_012
NA
J3_4W29_0731/DA/1424:1429,
1/DA/1564:1565,
1/DA/1568:1574		No text annotation
homologous
J3_7A0S_019
NA
J3_4W29_0311/DA/2091:2093,
1/DA/2196:2200,
1/DA/2223:2228		No text annotation
homologous
J3_7RQB_010
NA
J3_4W29_0741/DA/2282:2284,
1/DA/2384:2395,
1/DA/2421:2427		No text annotation
homologous
J3_9DFE_015
NA
J3_4W29_0321/DA/2295:2297,
1/DA/2321:2323,
1/DA/2332:2337		No text annotation
homologous
J3_7RQB_011
NA
J3_4W29_0331/DA/2517:2520,
1/DA/2545:2547,
1/DA/2561:2567		No text annotation
homologous
J3_7RQB_012
NA
J3_4W29_0751/DA/2517:2521,
1/DA/2544:2547,
1/DA/2561:2567		No text annotation
J3_4W29_0761/DA/2814:2815,
1/DA/2831:2836,
1/DA/2882:2886		No text annotation
homologous
J3_9DFE_019
NA
J3_4W29_0771/DB/11:16,
1/DB/68:69,
1/DB/107:109		No text annotation
homologous
J3_9DFE_020
NA
J4_4W29_0011/AA/115:122,
1/AA/239:240,
1/AA/286:289,
1/AA/311:312		No text annotation
homologous
J4_4LFB_001
NA
J4_4W29_0021/AA/142:144,
1/AA/178:183,
1/AA/194:198,
1/AA/219:221		No text annotation
homologous
J4_6CZR_012
NA
J4_4W29_0031/AA/575:577,
1/AA/764:769,
1/AA/810:821,
1/AA/879:880		No text annotation
homologous
J4_4LFB_003
NA
J4_4W29_0041/AW/7:10,
1/AW/25:27,
1/AW/43:52,
1/AW/62:66		No text annotation
homologous
J4_7U2I_014
NA
J4_4W29_0051/AX/6:10,
1/AX/25:27,
1/AX/43:51,
1/AX/63:67		No text annotation
J4_4W29_0061/BA/268:270,
1/BA/270:271,
1/BA/404:406,
1/BA/421:424		No text annotation
J4_4W29_0071/BA/297:301,
1/BA/316:319,
1/BA/323:325,
1/BA/337:341		No text annotation
homologous
J4_9DFE_002
NA
J4_4W29_0081/BA/601:604,
1/BA/624:628,
1/BA/635:638,
1/BA/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_4W29_0091/BA/1270:1276,
1/BA/1294:1295,
1/BA/1645:1648,
1/BA/2009:2010		No text annotation
homologous
J4_9DFE_003
NA
J4_4W29_0101/BA/1310:1314,
1/BA/1338:1343,
1/BA/1404:1405,
1/BA/1597:1604		No text annotation
homologous
J4_9DFE_004
NA
J4_4W29_0111/BA/1313:1314,
1/BA/1338:1343,
1/BA/1404:1405,
1/BA/1597:1603		No text annotation
homologous
J4_9DFE_005
NA
J4_4W29_0121/BA/1444:1445,
1/BA/1466:1467,
1/BA/1525:1526,
1/BA/1546:1547		No text annotation
homologous
J4_9DFE_006
NA
J4_4W29_0131/BA/1772:1776,
1/BA/1788:1792,
1/BA/1827:1830,
1/BA/1975:1979		No text annotation
homologous
J4_5J7L_025
NA
J4_4W29_0141/BA/1833:1835,
1/BA/1905:1906,
1/BA/1924:1933,
1/BA/1967:1972		No text annotation
homologous
J4_9DFE_008
NA
J4_4W29_0151/BA/2285:2289,
1/BA/2343:2347,
1/BA/2370:2372,
1/BA/2381:2383		No text annotation
homologous
J4_4WF9_008
NA
J4_4W29_0161/BA/2643:2646,
1/BA/2674:2676,
1/BA/2731:2735,
1/BA/2769:2771		No text annotation
homologous
J4_5J7L_028
NA
J4_4W29_0171/CA/115:122,
1/CA/239:240,
1/CA/286:289,
1/CA/311:312		No text annotation
homologous
J4_6CZR_027
NA
J4_4W29_0181/CA/142:144,
1/CA/178:183,
1/CA/194:198,
1/CA/219:221		No text annotation
homologous
J4_6CZR_012
NA
J4_4W29_0191/CA/575:577,
1/CA/764:769,
1/CA/810:821,
1/CA/879:880		No text annotation
homologous
J4_4LFB_003
NA
J4_4W29_0201/CW/7:10,
1/CW/25:27,
1/CW/43:52,
1/CW/62:66		No text annotation
homologous
J4_7U2I_014
NA
J4_4W29_0211/CX/7:10,
1/CX/25:28,
1/CX/42:51,
1/CX/63:66		No text annotation
J4_4W29_0221/DA/268:270,
1/DA/270:271,
1/DA/404:406,
1/DA/421:424		No text annotation
J4_4W29_0231/DA/297:301,
1/DA/316:319,
1/DA/323:325,
1/DA/337:341		No text annotation
homologous
J4_7A0S_002
NA
J4_4W29_0241/DA/601:604,
1/DA/624:628,
1/DA/635:638,
1/DA/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_4W29_0251/DA/1270:1276,
1/DA/1294:1295,
1/DA/1645:1648,
1/DA/2009:2010		No text annotation
homologous
J4_5J7L_021
NA
J4_4W29_0261/DA/1310:1314,
1/DA/1338:1343,
1/DA/1404:1405,
1/DA/1597:1604		No text annotation
homologous
J4_9DFE_004
NA
J4_4W29_0271/DA/1313:1314,
1/DA/1338:1343,
1/DA/1404:1405,
1/DA/1597:1603		No text annotation
homologous
J4_9DFE_005
NA
J4_4W29_0281/DA/1444:1445,
1/DA/1466:1467,
1/DA/1525:1526,
1/DA/1546:1547		No text annotation
homologous
J4_9DFE_006
NA
J4_4W29_0291/DA/1772:1776,
1/DA/1788:1792,
1/DA/1827:1830,
1/DA/1975:1979		No text annotation
homologous
J4_5J7L_025
NA
J4_4W29_0301/DA/1833:1835,
1/DA/1905:1906,
1/DA/1924:1933,
1/DA/1967:1972		No text annotation
homologous
J4_9DFE_008
NA
J4_4W29_0311/DA/2285:2289,
1/DA/2343:2347,
1/DA/2370:2372,
1/DA/2381:2383		No text annotation
homologous
J4_4WF9_008
NA
J4_4W29_0321/DA/2643:2646,
1/DA/2674:2676,
1/DA/2731:2735,
1/DA/2769:2771		No text annotation
homologous
J4_9DFE_010
NA
J5_4W29_0011/AA/36:39,
1/AA/403:406,
1/AA/436:442,
1/AA/492:500,
1/AA/545:548		No text annotation
homologous
J5_4LFB_001
NA
J5_4W29_0021/AA/58:61,
1/AA/106:113,
1/AA/314:316,
1/AA/337:339,
1/AA/350:354		No text annotation
homologous
J5_5J7L_003
NA
J5_4W29_0031/BA/47:54,
1/BA/116:121,
1/BA/130:131,
1/BA/148:150,
1/BA/176:178		No text annotation
homologous
J5_5J7L_013
NA
J5_4W29_0041/BA/531:533,
1/BA/560:564,
1/BA/577:579,
1/BA/1261:1262,
1/BA/2017:2018		No text annotation
homologous
J5_9DFE_003
NA
J5_4W29_0051/BA/584:589,
1/BA/668:671,
1/BA/809:812,
1/BA/1195:1196,
1/BA/1250:1256		No text annotation
homologous
J5_9DFE_004
NA
J5_4W29_0061/BA/1666:1682,
1/BA/1706:1707,
1/BA/1751:1752,
1/BA/1756:1764,
1/BA/1988:1994		No text annotation
J5_4W29_0071/BA/1674:1682,
1/BA/1706:1707,
1/BA/1751:1752,
1/BA/1756:1764,
1/BA/1988:1990		No text annotation
homologous
J5_9DFE_005
NA
J5_4W29_0081/BA/2057:2064,
1/BA/2446:2453,
1/BA/2500:2507,
1/BA/2582:2588,
1/BA/2606:2611		No text annotation
J5_4W29_0091/BA/2074:2077,
1/BA/2243:2246,
1/BA/2258:2259,
1/BA/2281:2282,
1/BA/2427:2435		No text annotation
homologous
J5_9DFE_007
NA
J5_4W29_0101/CA/36:39,
1/CA/403:406,
1/CA/436:442,
1/CA/492:500,
1/CA/545:548		No text annotation
homologous
J5_4LFB_001
NA
J5_4W29_0111/CA/58:61,
1/CA/106:113,
1/CA/314:316,
1/CA/337:339,
1/CA/350:354		No text annotation
homologous
J5_4LFB_002
NA
J5_4W29_0121/DA/47:54,
1/DA/116:121,
1/DA/130:131,
1/DA/148:150,
1/DA/176:178		No text annotation
homologous
J5_5J7L_013
NA
J5_4W29_0131/DA/268:270,
1/DA/270:271,
1/DA/357:375,
1/DA/399:406,
1/DA/421:424		No text annotation
J5_4W29_0141/DA/531:533,
1/DA/560:564,
1/DA/577:579,
1/DA/1261:1262,
1/DA/2017:2018		No text annotation
homologous
J5_9DFE_003
NA
J5_4W29_0201/DA/584:589,
1/DA/668:671,
1/DA/809:812,
1/DA/1195:1196,
1/DA/1250:1256		No text annotation
J5_4W29_0161/DA/1665:1682,
1/DA/1706:1707,
1/DA/1751:1752,
1/DA/1756:1764,
1/DA/1988:1995		No text annotation
J5_4W29_0171/DA/1669:1682,
1/DA/1706:1707,
1/DA/1751:1752,
1/DA/1756:1764,
1/DA/1988:1993		No text annotation
J5_4W29_0181/DA/2057:2064,
1/DA/2446:2453,
1/DA/2500:2507,
1/DA/2582:2588,
1/DA/2606:2611		No text annotation
J5_4W29_0191/DA/2074:2077,
1/DA/2243:2246,
1/DA/2258:2259,
1/DA/2281:2282,
1/DA/2427:2435		No text annotation
homologous
J5_9DFE_007
NA
J6_4W29_0011/BA/45:46,
1/BA/179:183,
1/BA/214:224,
1/BA/231:235,
1/BA/262:266,
1/BA/426:433		No text annotation
J6_4W29_0021/BA/2074:2077,
1/BA/2243:2246,
1/BA/2258:2259,
1/BA/2281:2284,
1/BA/2384:2395,
1/BA/2421:2435		No text annotation
J6_4W29_0031/DA/45:46,
1/DA/179:183,
1/DA/214:224,
1/DA/231:235,
1/DA/262:266,
1/DA/426:433		No text annotation
J6_4W29_0041/DA/2074:2077,
1/DA/2243:2246,
1/DA/2258:2259,
1/DA/2281:2284,
1/DA/2384:2395,
1/DA/2421:2435		No text annotation
J7_4W29_0011/BA/817:822,
1/BA/835:836,
1/BA/943:946,
1/BA/971:976,
1/BA/987:991,
1/BA/1163:1164,
1/BA/1185:1190		No text annotation
J7_4W29_0021/DA/817:822,
1/DA/835:836,
1/DA/943:946,
1/DA/971:976,
1/DA/987:991,
1/DA/1163:1164,
1/DA/1185:1190		No text annotation
J8_4W29_0021/BA/8:15,
1/BA/525:531,
1/BA/2018:2023,
1/BA/2040:2043,
1/BA/2625:2630,
1/BA/2788:2792,
1/BA/2804:2811,
1/BA/2889:2895		No text annotation
J8_4W29_0011/DA/8:16,
1/DA/524:531,
1/DA/2018:2023,
1/DA/2040:2043,
1/DA/2625:2630,
1/DA/2788:2792,
1/DA/2804:2811,
1/DA/2889:2895		No text annotation

Problematic loops

#loop idProblemSequence
J3_4W29_005No text annotation
J3_4W29_019No text annotation
J3_4W29_022No text annotation
J3_4W29_061No text annotation
J3_4W29_069No text annotation
J3_4W29_026No text annotation
J5_4W29_015No text annotation

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