3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
GGCAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4W29_028 not in the Motif Atlas
Homologous match to HL_6CZR_099
Geometric discrepancy: 0.2729
The information below is about HL_6CZR_099
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4W29|1|AA|G|1265
4W29|1|AA|G|1266
4W29|1|AA|C|1267
4W29|1|AA|A|1268
4W29|1|AA|A|1269
4W29|1|AA|C|1270

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AM
30S ribosomal protein S13
Chain AS
30S ribosomal protein S19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1235 s