3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CUGCAACCCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4W29_029 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.2291
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.2
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

4W29|1|AA|C|1314
4W29|1|AA|U|1315
4W29|1|AA|G|1316
4W29|1|AA|C|1317
4W29|1|AA|A|1318
4W29|1|AA|A|1319
4W29|1|AA|C|1320
4W29|1|AA|C|1321
4W29|1|AA|C|1322
4W29|1|AA|G|1323

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AM
30S ribosomal protein S13
Chain AN
30S ribosomal protein S14 type Z
Chain AS
30S ribosomal protein S19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1002 s