3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CCUUACAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_59710.2
Basepair signature
cWW-bif-R-R-R-R-R
Number of instances in this motif group
31

Unit IDs

4W29|1|AX|C|31
4W29|1|AX|C|32
4W29|1|AX|U|33
4W29|1|AX|U|34
4W29|1|AX|A|35
4W29|1|AX|C|36
4W29|1|AX|A|37
4W29|1|AX|A|38
4W29|1|AX|G|39

Current chains

Chain AX
tRNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain AM
30S ribosomal protein S13
Chain AV
mRNA
Chain AW
Transfer RNA; tRNA
Chain AY
Elongation factor G

Coloring options:

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