HL_4W29_098

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4W29|1|BA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W29_098 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.2234

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4W29|1|BA|C|2404
4W29|1|BA|G|2405
4W29|1|BA|U|2406
4W29|1|BA|G|2407
4W29|1|BA|U|2408
4W29|1|BA|G|2409
4W29|1|BA|G|2410
4W29|1|BA|A|2411
4W29|1|BA|A|2412
4W29|1|BA|G|2413

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L15